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The map label for this gene is xylB [H]

Identifier: 146341690

GI number: 146341690

Start: 4991762

End: 4993342

Strand: Reverse

Name: xylB [H]

Synonym: BRADO4795

Alternate gene names: 146341690

Gene position: 4993342-4991762 (Counterclockwise)

Preceding gene: 146341691

Following gene: 146341689

Centisome position: 66.97

GC content: 68.31

Gene sequence:

>1581_bases
ATGGCGGCGACCGCGACCCGCGATGTGATCGTCGGCATCGACGCCGGGACGTCGGTGATCAAGGCGGTCGCGTTCGCGCG
GGACGGCCGTCAGATCGGCGAGTTCGCGATTCCCAACAGCTATGCGACCTTGCCGGGAGGCCGTGTCGAGCAGGACATGG
CGCGGACCTGGACCGACACGGTGGCTGCTCTGCGCGGCCTCGGTGCCGCGCTGCCGGAGCTCTCCGGCCGTGTCGCTGCG
ATCGCCGTGACCGGGCAGGGCGACGGCACCTGGCTGATCGACGCCGACGGCCGCCCCGTCGCGCCGGCCCTGTTGTGGCT
CGACTCGCGCGCGGCGCGCTTCGTCGAGGCCTTCCGCAGCGGCGAGCGCAATGCGGCGCACTATCAACGGACCGGATCGG
GACTCAACGCCTGTCAGCAGGGGCCGCAGCTTGCCTGGCTGCAGGCTCACGGCATGGAGATGCTCGGACGCGCCAGCACG
GTGTTCCACTGCAAGGACTGGCTCTACTTCAAGCTGACCGGCGTGCGCGCCACCGATCCGTCGGAAGCGTCCTTCTCCTG
TGGTGATTTCCGCAAGCGCTGCTTCGATCGCGAATCTGCTGATCTGATCGGCATCTCCAGCTCGCTGCGTCTGTTCCCCG
ATGTCGTCGATGGTGTCGTTACCACGCATCGCTTGACGGGGATGGCCGCGGCGGAGACAGGCTTGCCCGAGGGCGTGCCG
GTGTCGCTCGGCTATGTCGATGTCATCTGCAATGCGCTCGGTGGCGGGTTGTATGATCCCAACCCCGATGTCGGCTGCAC
CATCATCGGCTCGACCGGCATGCACATGCGGCTGGCGACATCGGCTGATGACGTCAGGCTCAATGCCGAGGCGACCGGGT
ATACAATGCCGTTCCCGGTGGCCGGCCACTACGCGCAGATGCAGTCGACGATGGCGGCGACGTTGAACATCGACTGGCTG
CTCGACGTCGCGCGGGGCGTACTTGCGATGGAAGGCATCGCACGGTCGCGCAACGACCTGATCCGGCGGCTCGACGAGCG
CGTGCTGCAGGCGAAGGCGGGCGAGCTGCTGTATCATCCGTTCATCTCGGACGCGGGCGAGCGCGGACCCTTCGTGTCCC
ACGAGGCATCGGCGCAGCTGATCGGCCTGCGTACGCGTCATGGCTATTGGGATCTGATGCGAGCCGTCATGGAAGGGCTC
GCCTTCGCGGCGCGCGATTGCTACGCGGCGATGGGATCGCTTCCGTCGGAGATCCGGCTGACGGGCGGCGCGGCCCGCAG
CCGCGCTCTGGGCGCAATTCTCGGTGCCGCCGTCGGCAGCAGCATCCGGGTCTGCCGGCGCGAGGAAGCCGGCGCGTCCG
GCGCCGCGATGATCGCAGCTGTCGCGACCGGGCTCTATTCGAACATGATGGACTGCGCGGAGGAGTGGGTGAGACCGTAT
CTGGATGAGCCGCAGGCGCCTGAGCCGGCGCTCGCGGAGCGCTATGCGCGGCTGTTCCCGGCCTATGTCGAGGCACGCCT
GGCGGCGCGACCCGTCTGGAAGCAGCTTGCGGCGCAGCGCGCGGGAGCCAACCATGTCTAG

Upstream 100 bases:

>100_bases
CGCGGCCCGGTGACGTCGTGCCGTGCACGCTGGACGCGCGTCACCTCCACATCTTCGGCGCCGACGGCGTCTGCGTCCGG
CATGCGGAGGCGCGCTGAGC

Downstream 100 bases:

>100_bases
CTCCATCGCCATCATCGGCGACCGTTTCATGCTGCCCTCGGTGTTCGCCGAACGCATCACGGCGATCTGCGGCGATCATC
TCGACATCCGCATGCTCGAG

Product: putative carbohydrate kinase

Products: NA

Alternate protein names: Xylulokinase [H]

Number of amino acids: Translated: 526; Mature: 525

Protein sequence:

>526_residues
MAATATRDVIVGIDAGTSVIKAVAFARDGRQIGEFAIPNSYATLPGGRVEQDMARTWTDTVAALRGLGAALPELSGRVAA
IAVTGQGDGTWLIDADGRPVAPALLWLDSRAARFVEAFRSGERNAAHYQRTGSGLNACQQGPQLAWLQAHGMEMLGRAST
VFHCKDWLYFKLTGVRATDPSEASFSCGDFRKRCFDRESADLIGISSSLRLFPDVVDGVVTTHRLTGMAAAETGLPEGVP
VSLGYVDVICNALGGGLYDPNPDVGCTIIGSTGMHMRLATSADDVRLNAEATGYTMPFPVAGHYAQMQSTMAATLNIDWL
LDVARGVLAMEGIARSRNDLIRRLDERVLQAKAGELLYHPFISDAGERGPFVSHEASAQLIGLRTRHGYWDLMRAVMEGL
AFAARDCYAAMGSLPSEIRLTGGAARSRALGAILGAAVGSSIRVCRREEAGASGAAMIAAVATGLYSNMMDCAEEWVRPY
LDEPQAPEPALAERYARLFPAYVEARLAARPVWKQLAAQRAGANHV

Sequences:

>Translated_526_residues
MAATATRDVIVGIDAGTSVIKAVAFARDGRQIGEFAIPNSYATLPGGRVEQDMARTWTDTVAALRGLGAALPELSGRVAA
IAVTGQGDGTWLIDADGRPVAPALLWLDSRAARFVEAFRSGERNAAHYQRTGSGLNACQQGPQLAWLQAHGMEMLGRAST
VFHCKDWLYFKLTGVRATDPSEASFSCGDFRKRCFDRESADLIGISSSLRLFPDVVDGVVTTHRLTGMAAAETGLPEGVP
VSLGYVDVICNALGGGLYDPNPDVGCTIIGSTGMHMRLATSADDVRLNAEATGYTMPFPVAGHYAQMQSTMAATLNIDWL
LDVARGVLAMEGIARSRNDLIRRLDERVLQAKAGELLYHPFISDAGERGPFVSHEASAQLIGLRTRHGYWDLMRAVMEGL
AFAARDCYAAMGSLPSEIRLTGGAARSRALGAILGAAVGSSIRVCRREEAGASGAAMIAAVATGLYSNMMDCAEEWVRPY
LDEPQAPEPALAERYARLFPAYVEARLAARPVWKQLAAQRAGANHV
>Mature_525_residues
AATATRDVIVGIDAGTSVIKAVAFARDGRQIGEFAIPNSYATLPGGRVEQDMARTWTDTVAALRGLGAALPELSGRVAAI
AVTGQGDGTWLIDADGRPVAPALLWLDSRAARFVEAFRSGERNAAHYQRTGSGLNACQQGPQLAWLQAHGMEMLGRASTV
FHCKDWLYFKLTGVRATDPSEASFSCGDFRKRCFDRESADLIGISSSLRLFPDVVDGVVTTHRLTGMAAAETGLPEGVPV
SLGYVDVICNALGGGLYDPNPDVGCTIIGSTGMHMRLATSADDVRLNAEATGYTMPFPVAGHYAQMQSTMAATLNIDWLL
DVARGVLAMEGIARSRNDLIRRLDERVLQAKAGELLYHPFISDAGERGPFVSHEASAQLIGLRTRHGYWDLMRAVMEGLA
FAARDCYAAMGSLPSEIRLTGGAARSRALGAILGAAVGSSIRVCRREEAGASGAAMIAAVATGLYSNMMDCAEEWVRPYL
DEPQAPEPALAERYARLFPAYVEARLAARPVWKQLAAQRAGANHV

Specific function: L-lyxose utilization. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FGGY kinase family [H]

Homologues:

Organism=Escherichia coli, GI1790005, Length=476, Percent_Identity=26.2605042016807, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1787789, Length=523, Percent_Identity=26.1950286806883, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI1789987, Length=515, Percent_Identity=26.2135922330097, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789168, Length=493, Percent_Identity=23.9350912778905, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018483
- InterPro:   IPR018484
- InterPro:   IPR006000 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.17 [H]

Molecular weight: Translated: 56148; Mature: 56016

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00445 FGGY_KINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATATRDVIVGIDAGTSVIKAVAFARDGRQIGEFAIPNSYATLPGGRVEQDMARTWTDT
CCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VAALRGLGAALPELSGRVAAIAVTGQGDGTWLIDADGRPVAPALLWLDSRAARFVEAFRS
HHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
GERNAAHYQRTGSGLNACQQGPQLAWLQAHGMEMLGRASTVFHCKDWLYFKLTGVRATDP
CCCCCHHHHHCCCHHHHHHCCCCEEEEHHHCHHHHCCCCEEEEECCEEEEEEECCCCCCC
SEASFSCGDFRKRCFDRESADLIGISSSLRLFPDVVDGVVTTHRLTGMAAAETGLPEGVP
CCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCC
VSLGYVDVICNALGGGLYDPNPDVGCTIIGSTGMHMRLATSADDVRLNAEATGYTMPFPV
EECHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCC
AGHYAQMQSTMAATLNIDWLLDVARGVLAMEGIARSRNDLIRRLDERVLQAKAGELLYHP
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC
FISDAGERGPFVSHEASAQLIGLRTRHGYWDLMRAVMEGLAFAARDCYAAMGSLPSEIRL
HHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
TGGAARSRALGAILGAAVGSSIRVCRREEAGASGAAMIAAVATGLYSNMMDCAEEWVRPY
CCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDEPQAPEPALAERYARLFPAYVEARLAARPVWKQLAAQRAGANHV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AATATRDVIVGIDAGTSVIKAVAFARDGRQIGEFAIPNSYATLPGGRVEQDMARTWTDT
CCCCCCCEEEEECCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VAALRGLGAALPELSGRVAAIAVTGQGDGTWLIDADGRPVAPALLWLDSRAARFVEAFRS
HHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
GERNAAHYQRTGSGLNACQQGPQLAWLQAHGMEMLGRASTVFHCKDWLYFKLTGVRATDP
CCCCCHHHHHCCCHHHHHHCCCCEEEEHHHCHHHHCCCCEEEEECCEEEEEEECCCCCCC
SEASFSCGDFRKRCFDRESADLIGISSSLRLFPDVVDGVVTTHRLTGMAAAETGLPEGVP
CCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCC
VSLGYVDVICNALGGGLYDPNPDVGCTIIGSTGMHMRLATSADDVRLNAEATGYTMPFPV
EECHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCC
AGHYAQMQSTMAATLNIDWLLDVARGVLAMEGIARSRNDLIRRLDERVLQAKAGELLYHP
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC
FISDAGERGPFVSHEASAQLIGLRTRHGYWDLMRAVMEGLAFAARDCYAAMGSLPSEIRL
HHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
TGGAARSRALGAILGAAVGSSIRVCRREEAGASGAAMIAAVATGLYSNMMDCAEEWVRPY
CCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDEPQAPEPALAERYARLFPAYVEARLAARPVWKQLAAQRAGANHV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1714034 [H]