| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is braF [H]
Identifier: 146341678
GI number: 146341678
Start: 4977635
End: 4978417
Strand: Reverse
Name: braF [H]
Synonym: BRADO4783
Alternate gene names: 146341678
Gene position: 4978417-4977635 (Counterclockwise)
Preceding gene: 146341679
Following gene: 146341677
Centisome position: 66.77
GC content: 68.2
Gene sequence:
>783_bases ATGGATAGGGTGGCGGACCGGCTTTCGGCCCTCGGCTCGACCGCCGCGCTCGAGCTCCGCGGCGTCACCCGGATGTTCGG CGCGCTGGCGGCGTTGACCGACATCACCATCACGGTGCGACCGGGCGAGCGCCGCGCCGTTCTTGGCTCGAACGGCGCCG GCAAGACGACCTTGTTCAATTGCGTGACCGGGGACTTCCTGCCGACCTCAGGCACCATCCGCTTCTTCGGCGAGGATGTG ACCGCATTCCCGCCCTATGAGCGCATTCGGCGCGGACTGCGCCGGACCTATCAGATCTCGGCGCTGTTCCTCGGCCTCAC CGTGCGCGACAACGTCTATCTCGCCTGCCGTGGCGTCTCGCGCGCGCGCTTCTCGATGCTGCGCCCGCGCGCCAACGACG CCCTGATGCAGGCGGCCGAACGCCTGATCGAGGCGGTGCATCTGACGTCGGTGCGCGACCAGCTGGTGTCCGAGCTCGCC CATGGCCAGCAGCGCCAGCTCGAGATCGCGCTCGCGCTCGCCGGTGCGCCGCGCTTCATCCTGTTCGACGAGCCGGCAGC CGGCCTGTCGCCGACCGAGCGGCGCGAGCTGGTCGAGATCCTCACCGCGCTGCCGCCGCATATCGGCTACATCATCATCG AGCACGACATGGACGTGGCGCTGCGCGTCGTCGAGAGCGTGACGATGATGCATAACGGCCGCATCTTCAAGGAGGGGGCG CCGCAGGAGATCGAATCCGATCCGGAGGTGCAGGAGCTCTATCTCGGAGGCGGCCATGAATGA
Upstream 100 bases:
>100_bases ATCGTGTTCTGGTCCTCCGACGGCGTCATCGGCCTGTATGAGCGATGGCGCCGGCGCGGCGAGCGGAAGGAGACGCGGCC GCGTTCCGGAGGTCACGGCC
Downstream 100 bases:
>100_bases GGTCCGCCGCTCAGCGCCCGCACTCGAGGTTCGCGGCCTCGACGTCTATTACGGCCATTCGCATGCCTTGCAAGGTGTCG ATCTTCGCCTGGACAGCGGC
Product: putative ABC transporter ATP-binding protein
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MDRVADRLSALGSTAALELRGVTRMFGALAALTDITITVRPGERRAVLGSNGAGKTTLFNCVTGDFLPTSGTIRFFGEDV TAFPPYERIRRGLRRTYQISALFLGLTVRDNVYLACRGVSRARFSMLRPRANDALMQAAERLIEAVHLTSVRDQLVSELA HGQQRQLEIALALAGAPRFILFDEPAAGLSPTERRELVEILTALPPHIGYIIIEHDMDVALRVVESVTMMHNGRIFKEGA PQEIESDPEVQELYLGGGHE
Sequences:
>Translated_260_residues MDRVADRLSALGSTAALELRGVTRMFGALAALTDITITVRPGERRAVLGSNGAGKTTLFNCVTGDFLPTSGTIRFFGEDV TAFPPYERIRRGLRRTYQISALFLGLTVRDNVYLACRGVSRARFSMLRPRANDALMQAAERLIEAVHLTSVRDQLVSELA HGQQRQLEIALALAGAPRFILFDEPAAGLSPTERRELVEILTALPPHIGYIIIEHDMDVALRVVESVTMMHNGRIFKEGA PQEIESDPEVQELYLGGGHE >Mature_260_residues MDRVADRLSALGSTAALELRGVTRMFGALAALTDITITVRPGERRAVLGSNGAGKTTLFNCVTGDFLPTSGTIRFFGEDV TAFPPYERIRRGLRRTYQISALFLGLTVRDNVYLACRGVSRARFSMLRPRANDALMQAAERLIEAVHLTSVRDQLVSELA HGQQRQLEIALALAGAPRFILFDEPAAGLSPTERRELVEILTALPPHIGYIIIEHDMDVALRVVESVTMMHNGRIFKEGA PQEIESDPEVQELYLGGGHE
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0411
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI47078218, Length=211, Percent_Identity=29.8578199052133, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI45446740, Length=211, Percent_Identity=29.8578199052133, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI27881501, Length=229, Percent_Identity=27.5109170305677, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI30795238, Length=229, Percent_Identity=27.5109170305677, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI105990541, Length=211, Percent_Identity=28.436018957346, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI153792144, Length=190, Percent_Identity=30, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI27436953, Length=224, Percent_Identity=25.8928571428571, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI31657092, Length=232, Percent_Identity=30.1724137931034, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI21536376, Length=210, Percent_Identity=31.4285714285714, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI27477115, Length=171, Percent_Identity=29.2397660818713, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI6005701, Length=223, Percent_Identity=30.9417040358744, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI150417984, Length=211, Percent_Identity=29.8578199052133, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI27262624, Length=216, Percent_Identity=29.1666666666667, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI27262626, Length=216, Percent_Identity=29.1666666666667, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI116734710, Length=211, Percent_Identity=27.4881516587678, Blast_Score=81, Evalue=9e-16, Organism=Escherichia coli, GI1789864, Length=252, Percent_Identity=34.1269841269841, Blast_Score=146, Evalue=1e-36, Organism=Escherichia coli, GI1789593, Length=243, Percent_Identity=32.0987654320988, Blast_Score=117, Evalue=9e-28, Organism=Escherichia coli, GI1788761, Length=236, Percent_Identity=32.2033898305085, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1787712, Length=239, Percent_Identity=30.9623430962343, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787089, Length=233, Percent_Identity=33.4763948497854, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI87081709, Length=237, Percent_Identity=32.0675105485232, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1790190, Length=225, Percent_Identity=28.8888888888889, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1787370, Length=243, Percent_Identity=28.8065843621399, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI87081791, Length=239, Percent_Identity=28.4518828451883, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1788450, Length=240, Percent_Identity=28.3333333333333, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1787029, Length=242, Percent_Identity=30.5785123966942, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1786398, Length=241, Percent_Identity=29.045643153527, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1789672, Length=242, Percent_Identity=29.3388429752066, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788897, Length=220, Percent_Identity=31.8181818181818, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1789991, Length=221, Percent_Identity=28.9592760180996, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1788472, Length=219, Percent_Identity=27.3972602739726, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1788210, Length=245, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI87081782, Length=248, Percent_Identity=27.8225806451613, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786803, Length=241, Percent_Identity=28.6307053941909, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1790525, Length=247, Percent_Identity=28.3400809716599, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI87082268, Length=242, Percent_Identity=25.6198347107438, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1789586, Length=237, Percent_Identity=27.8481012658228, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI48994943, Length=231, Percent_Identity=29.004329004329, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1787792, Length=235, Percent_Identity=25.9574468085106, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1788225, Length=245, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1786253, Length=240, Percent_Identity=27.9166666666667, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI48994997, Length=236, Percent_Identity=24.5762711864407, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1790467, Length=237, Percent_Identity=26.5822784810127, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=26.271186440678, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1786563, Length=243, Percent_Identity=28.8065843621399, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790544, Length=247, Percent_Identity=27.9352226720648, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI48995001, Length=218, Percent_Identity=27.0642201834862, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786872, Length=235, Percent_Identity=27.6595744680851, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1788165, Length=243, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789032, Length=222, Percent_Identity=28.8288288288288, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789891, Length=215, Percent_Identity=29.3023255813954, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1787112, Length=244, Percent_Identity=29.5081967213115, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87081834, Length=212, Percent_Identity=26.8867924528302, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786698, Length=210, Percent_Identity=27.1428571428571, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87082267, Length=243, Percent_Identity=27.5720164609054, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1790162, Length=254, Percent_Identity=23.6220472440945, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1789962, Length=229, Percent_Identity=24.0174672489083, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787547, Length=247, Percent_Identity=24.2914979757085, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787105, Length=258, Percent_Identity=28.6821705426357, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1788540, Length=234, Percent_Identity=30.3418803418803, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789873, Length=166, Percent_Identity=30.7228915662651, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788644, Length=250, Percent_Identity=24.8, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786703, Length=215, Percent_Identity=25.1162790697674, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1787164, Length=227, Percent_Identity=25.1101321585903, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1787758, Length=234, Percent_Identity=25.2136752136752, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1786345, Length=244, Percent_Identity=22.9508196721311, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787113, Length=219, Percent_Identity=29.2237442922374, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787500, Length=227, Percent_Identity=22.9074889867841, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI145693107, Length=234, Percent_Identity=25.2136752136752, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1788506, Length=238, Percent_Identity=24.7899159663866, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71983516, Length=234, Percent_Identity=29.9145299145299, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71983510, Length=234, Percent_Identity=29.9145299145299, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71983523, Length=234, Percent_Identity=29.9145299145299, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI115533608, Length=235, Percent_Identity=28.936170212766, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17510237, Length=232, Percent_Identity=25.8620689655172, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17565586, Length=216, Percent_Identity=26.8518518518519, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17551700, Length=227, Percent_Identity=26.8722466960352, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17551702, Length=227, Percent_Identity=26.8722466960352, Blast_Score=70, Evalue=7e-13, Organism=Drosophila melanogaster, GI24643674, Length=228, Percent_Identity=27.1929824561404, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI24666092, Length=223, Percent_Identity=26.457399103139, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24648314, Length=224, Percent_Identity=25.8928571428571, Blast_Score=87, Evalue=7e-18, Organism=Drosophila melanogaster, GI221512771, Length=225, Percent_Identity=27.1111111111111, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI116007328, Length=213, Percent_Identity=27.2300469483568, Blast_Score=81, Evalue=9e-16, Organism=Drosophila melanogaster, GI28574150, Length=213, Percent_Identity=27.2300469483568, Blast_Score=81, Evalue=9e-16, Organism=Drosophila melanogaster, GI24641565, Length=221, Percent_Identity=23.9819004524887, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24582014, Length=242, Percent_Identity=25.6198347107438, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24582012, Length=242, Percent_Identity=25.6198347107438, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI161076684, Length=181, Percent_Identity=28.1767955801105, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581617, Length=181, Percent_Identity=28.1767955801105, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581615, Length=181, Percent_Identity=28.1767955801105, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076682, Length=181, Percent_Identity=28.1767955801105, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 28597; Mature: 28597
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRVADRLSALGSTAALELRGVTRMFGALAALTDITITVRPGERRAVLGSNGAGKTTLFN CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEECCCCCCCCEEEE CVTGDFLPTSGTIRFFGEDVTAFPPYERIRRGLRRTYQISALFLGLTVRDNVYLACRGVS ECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHEEEEEEEEEEECCCEEEEECCCC RARFSMLRPRANDALMQAAERLIEAVHLTSVRDQLVSELAHGQQRQLEIALALAGAPRFI HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCEEE LFDEPAAGLSPTERRELVEILTALPPHIGYIIIEHDMDVALRVVESVTMMHNGRIFKEGA EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCEEECCCC PQEIESDPEVQELYLGGGHE CCCCCCCCCHHHHCCCCCCC >Mature Secondary Structure MDRVADRLSALGSTAALELRGVTRMFGALAALTDITITVRPGERRAVLGSNGAGKTTLFN CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEECCCCCCCCEEEE CVTGDFLPTSGTIRFFGEDVTAFPPYERIRRGLRRTYQISALFLGLTVRDNVYLACRGVS ECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHEEEEEEEEEEECCCEEEEECCCC RARFSMLRPRANDALMQAAERLIEAVHLTSVRDQLVSELAHGQQRQLEIALALAGAPRFI HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCEEE LFDEPAAGLSPTERRELVEILTALPPHIGYIIIEHDMDVALRVVESVTMMHNGRIFKEGA EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCEEECCCC PQEIESDPEVQELYLGGGHE CCCCCCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]