Click here to switch to the map view.

The map label for this gene is hspC2 [H]

Identifier: 146341565

GI number: 146341565

Start: 4856195

End: 4856716

Strand: Reverse

Name: hspC2 [H]

Synonym: BRADO4666

Alternate gene names: 146341565

Gene position: 4856716-4856195 (Counterclockwise)

Preceding gene: 146341572

Following gene: 146341564

Centisome position: 65.13

GC content: 62.84

Gene sequence:

>522_bases
ATGGCTGAACCGACCAAGCTGCCTGTCAACACCGAGAAAGCCAATGCCCCGTCTCTGCAGGGATGGCGGCCGTTCGACAA
TCTGCGTCGCGAGATCGATCGTGTGTTCGAGGACTTCCACGGCGGTCTCTTTCGGACACCGTCGCTGTTCGATCAGCTGC
CGGGCCTTGCGCGCGCGCGATCGTTCGCCCTGGCGCCCGCGGTCGATGTCGCCGAGCACGACAAGGCCTATGAGGTCACC
GCGGAGCTGCCCGGGCTCGACGAGAAGAACGTCGAGGTGAAGGTCGCGAGCGGCGTGCTGTCGATCAAGGGCGAGAAGCA
GGAGGACAAGGAGGAGACGAAGAAGGACTATTATGTCCGCGAGCGCAGCTTCGGCTCGTTCGAACGCTCCTTCCAGATCC
CGGACGGTGTCGATAGCGACAAGATCGAGGCGGTGTTCAAGCAGGGCGTGCTGAAGGTGACCCTGCCGAAGAAACCCGAG
GTGCAGAAGGCCGCCAAGACCATCGACATCAAGGCGGCGTGA

Upstream 100 bases:

>100_bases
CTGGAGCGCGAGGAGGGCGGAGACCGGCCGATCTCATCGAGCGCGACGGCCGCCATGCCGCCTGAGAGCCGATCCTCGCG
TGAAGCAGGAGGATGACATC

Downstream 100 bases:

>100_bases
GCGCGATGGGTGCATGCGCGTTTCCTGTCCCATGATCATGGGACGACGGATGCGTTGCTGCCGGGAAGGGCCGCTGTCGC
GGCCCTTTTTTTCGCCGTCG

Product: putative HspC2 heat shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MAEPTKLPVNTEKANAPSLQGWRPFDNLRREIDRVFEDFHGGLFRTPSLFDQLPGLARARSFALAPAVDVAEHDKAYEVT
AELPGLDEKNVEVKVASGVLSIKGEKQEDKEETKKDYYVRERSFGSFERSFQIPDGVDSDKIEAVFKQGVLKVTLPKKPE
VQKAAKTIDIKAA

Sequences:

>Translated_173_residues
MAEPTKLPVNTEKANAPSLQGWRPFDNLRREIDRVFEDFHGGLFRTPSLFDQLPGLARARSFALAPAVDVAEHDKAYEVT
AELPGLDEKNVEVKVASGVLSIKGEKQEDKEETKKDYYVRERSFGSFERSFQIPDGVDSDKIEAVFKQGVLKVTLPKKPE
VQKAAKTIDIKAA
>Mature_172_residues
AEPTKLPVNTEKANAPSLQGWRPFDNLRREIDRVFEDFHGGLFRTPSLFDQLPGLARARSFALAPAVDVAEHDKAYEVTA
ELPGLDEKNVEVKVASGVLSIKGEKQEDKEETKKDYYVRERSFGSFERSFQIPDGVDSDKIEAVFKQGVLKVTLPKKPEV
QKAAKTIDIKAA

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 19332; Mature: 19201

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPTKLPVNTEKANAPSLQGWRPFDNLRREIDRVFEDFHGGLFRTPSLFDQLPGLARAR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHH
SFALAPAVDVAEHDKAYEVTAELPGLDEKNVEVKVASGVLSIKGEKQEDKEETKKDYYVR
HHHCCCCCCHHHCCCEEEEEECCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHH
ERSFGSFERSFQIPDGVDSDKIEAVFKQGVLKVTLPKKPEVQKAAKTIDIKAA
HCCCCCHHHCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
AEPTKLPVNTEKANAPSLQGWRPFDNLRREIDRVFEDFHGGLFRTPSLFDQLPGLARAR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHH
SFALAPAVDVAEHDKAYEVTAELPGLDEKNVEVKVASGVLSIKGEKQEDKEETKKDYYVR
HHHCCCCCCHHHCCCEEEEEECCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHH
ERSFGSFERSFQIPDGVDSDKIEAVFKQGVLKVTLPKKPEVQKAAKTIDIKAA
HCCCCCHHHCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA