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The map label for this gene is ydeP [H]

Identifier: 146341538

GI number: 146341538

Start: 4827627

End: 4828004

Strand: Reverse

Name: ydeP [H]

Synonym: BRADO4636

Alternate gene names: 146341538

Gene position: 4828004-4827627 (Counterclockwise)

Preceding gene: 146341541

Following gene: 146341537

Centisome position: 64.75

GC content: 66.14

Gene sequence:

>378_bases
ATGAAACGGAAGAATTTCACCCGCCGCCCGGGCTGCGCGGTCGAAGCCACGCTGGATCTGATCGACGGCAAGTGGAAAGG
CGTCATCCTTTACCACCTGCAGGGCGGCACCCAGCGCTTCGGCGGGCTTCGGCGGCTGATGCCGGGCATCACCCAGCGCA
TGCTGACCAAGCAGCTGCGCGCGCTGGAGGATGACGGGCTGGTGGTTCGCAAGGTCTATGCCGAGGTGCCGCCGCGGGTC
GATTACACGCTCTCCGAGGTCGGCGAGAGCCTGCGGCCGGTGATCGAGGTGCTGAGGACATGGGGCGAGCGGCACCAGGA
ACGGCTGTCCTGCGCTCCCGTTGCAGAGACCATCAAAACGCCGCATCAGACCGCCTGA

Upstream 100 bases:

>100_bases
GGCCTTTCATAGGGCCTACTTGTCCTGCTGGCGTCATTTCGACAAGTACTGTAAATATGGGGAACTAGTCCCCGTTTGGA
TACTATTGGGCCAAACCACG

Downstream 100 bases:

>100_bases
GCTTGGCCGCACCGGCCGTACCGCCTATATCGAAGCCGTCATTTTCCCAGGATTGCTCGCATGACGCTGATTCGCTCCTC
CATGGTCCTGCTGCTTGCGC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKRKNFTRRPGCAVEATLDLIDGKWKGVILYHLQGGTQRFGGLRRLMPGITQRMLTKQLRALEDDGLVVRKVYAEVPPRV
DYTLSEVGESLRPVIEVLRTWGERHQERLSCAPVAETIKTPHQTA

Sequences:

>Translated_125_residues
MKRKNFTRRPGCAVEATLDLIDGKWKGVILYHLQGGTQRFGGLRRLMPGITQRMLTKQLRALEDDGLVVRKVYAEVPPRV
DYTLSEVGESLRPVIEVLRTWGERHQERLSCAPVAETIKTPHQTA
>Mature_125_residues
MKRKNFTRRPGCAVEATLDLIDGKWKGVILYHLQGGTQRFGGLRRLMPGITQRMLTKQLRALEDDGLVVRKVYAEVPPRV
DYTLSEVGESLRPVIEVLRTWGERHQERLSCAPVAETIKTPHQTA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=92, Percent_Identity=38.0434782608696, Blast_Score=73, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14208; Mature: 14208

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKNFTRRPGCAVEATLDLIDGKWKGVILYHLQGGTQRFGGLRRLMPGITQRMLTKQLR
CCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
ALEDDGLVVRKVYAEVPPRVDYTLSEVGESLRPVIEVLRTWGERHQERLSCAPVAETIKT
HHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PHQTA
CCCCC
>Mature Secondary Structure
MKRKNFTRRPGCAVEATLDLIDGKWKGVILYHLQGGTQRFGGLRRLMPGITQRMLTKQLR
CCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
ALEDDGLVVRKVYAEVPPRVDYTLSEVGESLRPVIEVLRTWGERHQERLSCAPVAETIKT
HHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PHQTA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]