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The map label for this gene is rarA [H]

Identifier: 146341536

GI number: 146341536

Start: 4824841

End: 4826175

Strand: Reverse

Name: rarA [H]

Synonym: BRADO4634

Alternate gene names: 146341536

Gene position: 4826175-4824841 (Counterclockwise)

Preceding gene: 146341537

Following gene: 146341534

Centisome position: 64.72

GC content: 67.64

Gene sequence:

>1335_bases
ATGAGCCCGAAGCGCCCCCAGCAAGGCGGGCCGAGCCTCTTCGCCGCGGCGGGGCTGGAGCATGATGCGCCGCGGCCGCT
GCCGGAGCGGCTGCGTCCACACAAGCTCTCGGATGTGGTCGGGCAGGATCATATCCTCGGCCCCGACGGCGCGCTGACCC
GCATGCTGGAGACGCGCACGCTTGGCTCGCTGATCTTCTGGGGACCGCCCGGCACCGGCAAGACCACGGTGGCGCGGCTG
CTCGCGGACGCCACCGAGCTGCATTTCGAGCAGATCTCGGCCGTGTTCTCCGGCGTCGCCGATTTGAAGAAGGTGTTTGA
TGCGGCGCGCGCCCGCCGCGAGACCGGGCAGGGCACGCTTCTCTTCGTCGACGAGGTGCATCGCTTCAACAGGGCGCAGC
AGGACTCCTTTCTCCCCGTGATGGAGGACGGCACGGTCGTGCTGGTCGGCGCGACCACCGAGAACCCATCCTTCGAGCTC
AATGCGGCTCTGCTGTCACGTTCGCGCGTGCTGATCTTCCATTCGCTCGACGCCGCCGCGATCGAAGAGCTCTACAGTCA
TGCCGAAGAGGTCGAGGGCCGCAAGCTGCCGCTCGACGAGGACGCGCGCCATGTGCTGATCCGCATGGCCGACGGTGACG
GCCGGGCGTCGCTGACGCTCGCCGAGGAGGTGTGGCGCTCGGCGCGCAAGGGCGAGATCTTCAACGCCGTGCAGCTGCAG
GACGTCCTGCAGCGTCGCGCCCCGATCTACGATAAATCCGCCGACGGCCACTACAACCTGATCTCGGCGATGCACAAATC
GGTGCGCGGCTCGGATCCCGATGCCGCGCTGTACTACTTCGCCCGCATGCTCGACGCGGGCGAGGACCCGCTGTTCCTCG
CCCGCCGCATCGTCCGCATGGCCGTCGAGGATATCGGCCTCGCCGATCCGCAGGCGCTGGTGATCGCCAACGCCGCCAAG
GACGCCTACGACTTTCTCGGCTCGCCCGAAGGCGAGCTTGCGATTGCCCAGGCCGTGATCTACGTCGCCACCGCGCCGAA
ATCCAACGCCGCCTACAAAGCCTTCGGCGCCGCCAAGCGTGTCGCGAAGGAGGGCGGCTCCCTGCTGCCGCCGAAGCACA
TCCTCAACGCGCCGACCAAGCTGATGCAGAGCGAAGGCTATGGCTCGGGCTATCAGTACGACCACGACGCGCCGGATGCG
TTTTCGGGGCAGGACTACTTCCCGGAAGCCCTGGGCCGCCAGCACTTCTACGACCCGCCCGAACGCGGCTTCGAACGCGA
GATCCGCAAGCGGCTGGATTATTGGGCGAAGCTGCGGAAGGAGCGGGGTGGGTAG

Upstream 100 bases:

>100_bases
CCAAGACCACCGATCTCGACAAGGCCTCGCGCGAGTCCGCTCGCCTCTGGCGTATTACCGTGCTGCGCGGCGGCCAGCAG
ATCAACGTCACGCTCGGCGG

Downstream 100 bases:

>100_bases
GGGATACGCGCTTCGCTGCGGGCCGTGCCGCTGATGTTGTGCGATGTCTTCACCACGTCATTGCGAGCGCAGCGAAGCAA
TCCAGAGTCCTCGTTCCGCC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MSPKRPQQGGPSLFAAAGLEHDAPRPLPERLRPHKLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARL
LADATELHFEQISAVFSGVADLKKVFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFEL
NAALLSRSRVLIFHSLDAAAIEELYSHAEEVEGRKLPLDEDARHVLIRMADGDGRASLTLAEEVWRSARKGEIFNAVQLQ
DVLQRRAPIYDKSADGHYNLISAMHKSVRGSDPDAALYYFARMLDAGEDPLFLARRIVRMAVEDIGLADPQALVIANAAK
DAYDFLGSPEGELAIAQAVIYVATAPKSNAAYKAFGAAKRVAKEGGSLLPPKHILNAPTKLMQSEGYGSGYQYDHDAPDA
FSGQDYFPEALGRQHFYDPPERGFEREIRKRLDYWAKLRKERGG

Sequences:

>Translated_444_residues
MSPKRPQQGGPSLFAAAGLEHDAPRPLPERLRPHKLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARL
LADATELHFEQISAVFSGVADLKKVFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFEL
NAALLSRSRVLIFHSLDAAAIEELYSHAEEVEGRKLPLDEDARHVLIRMADGDGRASLTLAEEVWRSARKGEIFNAVQLQ
DVLQRRAPIYDKSADGHYNLISAMHKSVRGSDPDAALYYFARMLDAGEDPLFLARRIVRMAVEDIGLADPQALVIANAAK
DAYDFLGSPEGELAIAQAVIYVATAPKSNAAYKAFGAAKRVAKEGGSLLPPKHILNAPTKLMQSEGYGSGYQYDHDAPDA
FSGQDYFPEALGRQHFYDPPERGFEREIRKRLDYWAKLRKERGG
>Mature_443_residues
SPKRPQQGGPSLFAAAGLEHDAPRPLPERLRPHKLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARLL
ADATELHFEQISAVFSGVADLKKVFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELN
AALLSRSRVLIFHSLDAAAIEELYSHAEEVEGRKLPLDEDARHVLIRMADGDGRASLTLAEEVWRSARKGEIFNAVQLQD
VLQRRAPIYDKSADGHYNLISAMHKSVRGSDPDAALYYFARMLDAGEDPLFLARRIVRMAVEDIGLADPQALVIANAAKD
AYDFLGSPEGELAIAQAVIYVATAPKSNAAYKAFGAAKRVAKEGGSLLPPKHILNAPTKLMQSEGYGSGYQYDHDAPDAF
SGQDYFPEALGRQHFYDPPERGFEREIRKRLDYWAKLRKERGG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=437, Percent_Identity=41.8764302059497, Blast_Score=310, Evalue=2e-84,
Organism=Homo sapiens, GI18426904, Length=437, Percent_Identity=37.9862700228833, Blast_Score=257, Evalue=1e-68,
Organism=Escherichia coli, GI1787119, Length=425, Percent_Identity=45.6470588235294, Blast_Score=367, Evalue=1e-103,
Organism=Saccharomyces cerevisiae, GI6324111, Length=423, Percent_Identity=39.4799054373522, Blast_Score=294, Evalue=2e-80,
Organism=Saccharomyces cerevisiae, GI6324039, Length=209, Percent_Identity=27.7511961722488, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48827; Mature: 48696

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPKRPQQGGPSLFAAAGLEHDAPRPLPERLRPHKLSDVVGQDHILGPDGALTRMLETRT
CCCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCHHHHHHCCCCEECCCHHHHHHHHHHH
LGSLIFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDAARARRETGQGTL
HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LFVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRSRVLIFHSLDAAA
EEHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCHHHHHHCCCEEEEEECCCHHH
IEELYSHAEEVEGRKLPLDEDARHVLIRMADGDGRASLTLAEEVWRSARKGEIFNAVQLQ
HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHHCCCHHHHHHHH
DVLQRRAPIYDKSADGHYNLISAMHKSVRGSDPDAALYYFARMLDAGEDPLFLARRIVRM
HHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
AVEDIGLADPQALVIANAAKDAYDFLGSPEGELAIAQAVIYVATAPKSNAAYKAFGAAKR
HHHHCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHEEEEEECCCCCCHHHHHHHHHH
VAKEGGSLLPPKHILNAPTKLMQSEGYGSGYQYDHDAPDAFSGQDYFPEALGRQHFYDPP
HHHCCCCCCCCHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
ERGFEREIRKRLDYWAKLRKERGG
CCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SPKRPQQGGPSLFAAAGLEHDAPRPLPERLRPHKLSDVVGQDHILGPDGALTRMLETRT
CCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCHHHHHHCCCCEECCCHHHHHHHHHHH
LGSLIFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDAARARRETGQGTL
HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LFVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRSRVLIFHSLDAAA
EEHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCHHHHHHCCCEEEEEECCCHHH
IEELYSHAEEVEGRKLPLDEDARHVLIRMADGDGRASLTLAEEVWRSARKGEIFNAVQLQ
HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHHCCCHHHHHHHH
DVLQRRAPIYDKSADGHYNLISAMHKSVRGSDPDAALYYFARMLDAGEDPLFLARRIVRM
HHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
AVEDIGLADPQALVIANAAKDAYDFLGSPEGELAIAQAVIYVATAPKSNAAYKAFGAAKR
HHHHCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHEEEEEECCCCCCHHHHHHHHHH
VAKEGGSLLPPKHILNAPTKLMQSEGYGSGYQYDHDAPDAFSGQDYFPEALGRQHFYDPP
HHHCCCCCCCCHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
ERGFEREIRKRLDYWAKLRKERGG
CCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]