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The map label for this gene is ydcN [C]

Identifier: 146341478

GI number: 146341478

Start: 4768113

End: 4768778

Strand: Direct

Name: ydcN [C]

Synonym: BRADO4571

Alternate gene names: 146341478

Gene position: 4768113-4768778 (Clockwise)

Preceding gene: 146341473

Following gene: 146341479

Centisome position: 63.94

GC content: 67.42

Gene sequence:

>666_bases
GTGACCGATACCGCCATCAGCGCGCCCGCCGAAGGTCCTCATTCCCAGCTCGGCCAGTGCCTGAAGGCCGCCAGGCAGGC
GCGCGGGCTGACCTTGAAGCAGGTCGCGGAGAAAACGGGCATGGCGCTGTCGACCCTGTCGAAGGTCGAGAACGGCCTGA
TGTCGCTGACCTACGACAAGCTGCTGCAGCTCACCTCGGGCCTGCAGATGGACATCGCCGAGCTGTTCAGCCCGGCCGCG
CCGCGCCCCGAGCCTGGCCGCCCGGTGACCGCCCGCCGCAGCGTCAGCCGCGCCGGCCAGGGCCAGATTGTCAGCACCAA
ATTCTACACCTACACCTATCAATGTACCGACCTGATCGGAAAGCGCATGGTGCCGATGATCACCGAGGTCCGCGCCCGCA
CGCTCGACGAGTTCGGCCCCCTGCTCCGCCACAGCGGCGAGGAGTACTTCCTGGTCACCCGCGGCACCATCGCCGTGCAC
ACCGAGTTCTACGCGCCGGAGATCCTGCACGAAGGCGACGGCATCTACCTCGACAGCACCATGGGCCACGCCTACCTCAA
CGCCGGCGAAGCGGCCTCGGCGCAGGGCGTGTGCCTCTGCACCAGCGAGCAGGCGGATCTGTTCGAGCAGTTGCACCGGA
TCGCGAAGAGGGATGCGGTGGAGTGA

Upstream 100 bases:

>100_bases
CAGACAGATGATTGATTGTGCTGCGCTTTCGCGCCAGATTGGCGAGCCGGTGAGGCACCGCGACAATGCCGATCCGCTAA
CGGATTTTCCGGAGACACAA

Downstream 100 bases:

>100_bases
AGGGATGGCGCGGCGTTGCAGGGCTGACTGCCGACCGCTATGTTGGACAGAAGCGCTTTTTGTTCAACAGGACCTCACGC
TCATGACCAAGGGACGATCC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator HTH_3 Family; Helix-Turn-Helix Family; Helix-Turn-Helix Domain-Containing Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator Xre Family; XRE Family-Like Protein; Transcriptional Regulator XRE Family With Cupin Sensor; HTH_3family Transcriptional Regulator

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTDTAISAPAEGPHSQLGQCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLMSLTYDKLLQLTSGLQMDIAELFSPAA
PRPEPGRPVTARRSVSRAGQGQIVSTKFYTYTYQCTDLIGKRMVPMITEVRARTLDEFGPLLRHSGEEYFLVTRGTIAVH
TEFYAPEILHEGDGIYLDSTMGHAYLNAGEAASAQGVCLCTSEQADLFEQLHRIAKRDAVE

Sequences:

>Translated_221_residues
MTDTAISAPAEGPHSQLGQCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLMSLTYDKLLQLTSGLQMDIAELFSPAA
PRPEPGRPVTARRSVSRAGQGQIVSTKFYTYTYQCTDLIGKRMVPMITEVRARTLDEFGPLLRHSGEEYFLVTRGTIAVH
TEFYAPEILHEGDGIYLDSTMGHAYLNAGEAASAQGVCLCTSEQADLFEQLHRIAKRDAVE
>Mature_220_residues
TDTAISAPAEGPHSQLGQCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLMSLTYDKLLQLTSGLQMDIAELFSPAAP
RPEPGRPVTARRSVSRAGQGQIVSTKFYTYTYQCTDLIGKRMVPMITEVRARTLDEFGPLLRHSGEEYFLVTRGTIAVHT
EFYAPEILHEGDGIYLDSTMGHAYLNAGEAASAQGVCLCTSEQADLFEQLHRIAKRDAVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24109; Mature: 23978

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTAISAPAEGPHSQLGQCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLMSLTYDK
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
LLQLTSGLQMDIAELFSPAAPRPEPGRPVTARRSVSRAGQGQIVSTKFYTYTYQCTDLIG
HHHHHCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHH
KRMVPMITEVRARTLDEFGPLLRHSGEEYFLVTRGTIAVHTEFYAPEILHEGDGIYLDST
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECHHCHHHHCCCCCEEEECC
MGHAYLNAGEAASAQGVCLCTSEQADLFEQLHRIAKRDAVE
CCHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TDTAISAPAEGPHSQLGQCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLMSLTYDK
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
LLQLTSGLQMDIAELFSPAAPRPEPGRPVTARRSVSRAGQGQIVSTKFYTYTYQCTDLIG
HHHHHCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHH
KRMVPMITEVRARTLDEFGPLLRHSGEEYFLVTRGTIAVHTEFYAPEILHEGDGIYLDST
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECHHCHHHHCCCCCEEEECC
MGHAYLNAGEAASAQGVCLCTSEQADLFEQLHRIAKRDAVE
CCHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA