Click here to switch to the map view.

The map label for this gene is omp2a [H]

Identifier: 146341392

GI number: 146341392

Start: 4680410

End: 4681972

Strand: Reverse

Name: omp2a [H]

Synonym: BRADO4479

Alternate gene names: 146341392

Gene position: 4681972-4680410 (Counterclockwise)

Preceding gene: 146341393

Following gene: 146341391

Centisome position: 62.79

GC content: 62.96

Gene sequence:

>1563_bases
ATGAAGACGGTTAAGAGCCTTATCCTTGGCTCGGCGGCGGCCCTGCTCGCCGTGGGCGCAGCCCAGGCGGCAGACCTTCC
GATCAAGGCCAAGGCTGTCGAGTATGTGAAGGTCTGCTCCCTCTACGGCGCAGGCTTCTACTATATCCCCGGCACCGACA
CCTGCATCAAGCTCGGCGGCTATCTGCGCGCTGACGTGATCCTCGGTGGCGCGAACGACTACGGCTTCAACAACAGCCAG
GCGACTGCGAACGGTGGTTCGAACAATCGTCTGACCAACTACTACTACAGCCGCGCTCGTACGGTCCTCAACATCGACAC
CCGCACGGCGACCGAATACGGCGTCGTCCGCACCTACGCTGATATGATCTTCAGCTACGACACGGGCAACATCACCAACA
CCAGCACTGGCTCGGCCTTCGCTGCTGGCGGCACGACGCTCGGCGTCTACAACGCGTTCATCCAGTTCGCTGGCTTCACC
CTCGGTCGCTCGGTCTCGATCTTCGACACGCCGTGGCAGAGCTATCCGGCTGGTGGTCCCGATACCATTCCCGGCGGTTC
CAACCACGTGACCGGTATCAACCAGATCGCCTACACCGCCGACTTCGGTCAGGGCATCACCGGCTCGCTGGCCTTGGAGA
ACCCGGACTCGCAGTCCAACGGCAACGGCAACCTGTGGAACGTGAACGGCTTCGCGGGAACCGGCTCGGTTAACGCCGCG
GGCGTGATCACCACCACTCCGGCTGCCACCGTCGCCGGCAACGCCCTCATCAACGGTCAGTACGGCACGAACGCTCTGGG
CGGCACGCGCTCGCCGGACATCGTCGGTGCCCTCCGCGTCGATCAGGCCTGGGGTCTGTTCCAGCTGTCGGCTGCTGCGC
ATGACATTCATCCCGCCTACTACGGCGGATCGGAAGTCACCGGTCATCCGTCGGACAAGTGGGGTTGGGCTGTGCAGGCC
GCTCTGTCGATCAAGAACATCCCGACCGGTCCGGGTGACTCGATCAACTTGCAGGCTGTCTACACCGATGGCATGACCCG
CGAGAACTTCCAGGTTCTGTTCCCGCAGCAGTTCGTCATGTTCAGCGGTACCGGCGTCGCCGGAGCCTATCAGAGCGTCG
GTTTCGCCGGCATTTCTGACGGTGTCTTCGGAGCTGGCGGCAGCATCGAAACCACCAAGTCCTGGGGCTTCCGTGGCGGT
TACACCCACAACTGGAACCCGAACTGGGCGACCGCGATCTACGGCGGCTATGCTGGCCTGAGCTACACCAGCAACGCGAA
GGCGCTGATCTGCGCGAACTTCGTCGCCGCCTACGGCGCCGCCACGGCGACCTGCAACCCCGACTTCAACTTCGGCGTTG
TCGGTATCAACACGGTCTGGACCCCGGTCAAGAACCTGGCCTTCACGGCTGACCTGAGCTGGTCGCGTCTGGATCAGAAG
TACACTGGCACGATCGCCGTCCCCGCTTCGTCCTACTCGACGTTTGCGAAGCCGGCTGCGACGTACGAGCTTAAGGATCA
GAACTCCCTGACCCTGATGCTCCGCGCCCAGCGCACCTTCTAA

Upstream 100 bases:

>100_bases
GGCGCGAAGCGGCTGAAGCGGTTTTTCGGGATGGGAATGACGGGATCGTCCTGGGGGATTTAGGTCCGGTCGTCTCAGAA
GAGCAACTTGGAGGTTTAAC

Downstream 100 bases:

>100_bases
TACCGTCTACGCAATCAACTTCGAGCCCCCGGCAGGTCACTGCCGGGGGCTTTTATTTTTGTCGATTTCATCCAGGAGCA
GTCCTGCCTTCTTCTGGACG

Product: putative porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MKTVKSLILGSAAALLAVGAAQAADLPIKAKAVEYVKVCSLYGAGFYYIPGTDTCIKLGGYLRADVILGGANDYGFNNSQ
ATANGGSNNRLTNYYYSRARTVLNIDTRTATEYGVVRTYADMIFSYDTGNITNTSTGSAFAAGGTTLGVYNAFIQFAGFT
LGRSVSIFDTPWQSYPAGGPDTIPGGSNHVTGINQIAYTADFGQGITGSLALENPDSQSNGNGNLWNVNGFAGTGSVNAA
GVITTTPAATVAGNALINGQYGTNALGGTRSPDIVGALRVDQAWGLFQLSAAAHDIHPAYYGGSEVTGHPSDKWGWAVQA
ALSIKNIPTGPGDSINLQAVYTDGMTRENFQVLFPQQFVMFSGTGVAGAYQSVGFAGISDGVFGAGGSIETTKSWGFRGG
YTHNWNPNWATAIYGGYAGLSYTSNAKALICANFVAAYGAATATCNPDFNFGVVGINTVWTPVKNLAFTADLSWSRLDQK
YTGTIAVPASSYSTFAKPAATYELKDQNSLTLMLRAQRTF

Sequences:

>Translated_520_residues
MKTVKSLILGSAAALLAVGAAQAADLPIKAKAVEYVKVCSLYGAGFYYIPGTDTCIKLGGYLRADVILGGANDYGFNNSQ
ATANGGSNNRLTNYYYSRARTVLNIDTRTATEYGVVRTYADMIFSYDTGNITNTSTGSAFAAGGTTLGVYNAFIQFAGFT
LGRSVSIFDTPWQSYPAGGPDTIPGGSNHVTGINQIAYTADFGQGITGSLALENPDSQSNGNGNLWNVNGFAGTGSVNAA
GVITTTPAATVAGNALINGQYGTNALGGTRSPDIVGALRVDQAWGLFQLSAAAHDIHPAYYGGSEVTGHPSDKWGWAVQA
ALSIKNIPTGPGDSINLQAVYTDGMTRENFQVLFPQQFVMFSGTGVAGAYQSVGFAGISDGVFGAGGSIETTKSWGFRGG
YTHNWNPNWATAIYGGYAGLSYTSNAKALICANFVAAYGAATATCNPDFNFGVVGINTVWTPVKNLAFTADLSWSRLDQK
YTGTIAVPASSYSTFAKPAATYELKDQNSLTLMLRAQRTF
>Mature_520_residues
MKTVKSLILGSAAALLAVGAAQAADLPIKAKAVEYVKVCSLYGAGFYYIPGTDTCIKLGGYLRADVILGGANDYGFNNSQ
ATANGGSNNRLTNYYYSRARTVLNIDTRTATEYGVVRTYADMIFSYDTGNITNTSTGSAFAAGGTTLGVYNAFIQFAGFT
LGRSVSIFDTPWQSYPAGGPDTIPGGSNHVTGINQIAYTADFGQGITGSLALENPDSQSNGNGNLWNVNGFAGTGSVNAA
GVITTTPAATVAGNALINGQYGTNALGGTRSPDIVGALRVDQAWGLFQLSAAAHDIHPAYYGGSEVTGHPSDKWGWAVQA
ALSIKNIPTGPGDSINLQAVYTDGMTRENFQVLFPQQFVMFSGTGVAGAYQSVGFAGISDGVFGAGGSIETTKSWGFRGG
YTHNWNPNWATAIYGGYAGLSYTSNAKALICANFVAAYGAATATCNPDFNFGVVGINTVWTPVKNLAFTADLSWSRLDQK
YTGTIAVPASSYSTFAKPAATYELKDQNSLTLMLRAQRTF

Specific function: Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 54348; Mature: 54348

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVKSLILGSAAALLAVGAAQAADLPIKAKAVEYVKVCSLYGAGFYYIPGTDTCIKLGG
CCHHHHHHHCCHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEECC
YLRADVILGGANDYGFNNSQATANGGSNNRLTNYYYSRARTVLNIDTRTATEYGVVRTYA
EEEEEEEEECCCCCCCCCCCEECCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHH
DMIFSYDTGNITNTSTGSAFAAGGTTLGVYNAFIQFAGFTLGRSVSIFDTPWQSYPAGGP
HHHEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCHHCCCEEEEEECCCCCCCCCCC
DTIPGGSNHVTGINQIAYTADFGQGITGSLALENPDSQSNGNGNLWNVNGFAGTGSVNAA
CCCCCCCCCCCCCHHEEEEECCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC
GVITTTPAATVAGNALINGQYGTNALGGTRSPDIVGALRVDQAWGLFQLSAAAHDIHPAY
EEEEECCCHHHCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECHHHHCCCEE
YGGSEVTGHPSDKWGWAVQAALSIKNIPTGPGDSINLQAVYTDGMTRENFQVLFPQQFVM
ECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEECCCEEEE
FSGTGVAGAYQSVGFAGISDGVFGAGGSIETTKSWGFRGGYTHNWNPNWATAIYGGYAGL
EECCCCCCHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCC
SYTSNAKALICANFVAAYGAATATCNPDFNFGVVGINTVWTPVKNLAFTADLSWSRLDQK
EECCCCCEEEEHHHHHHHCCCEEECCCCCCEEEEECCHHHHCHHHEEEEECCCHHHCCCC
YTGTIAVPASSYSTFAKPAATYELKDQNSLTLMLRAQRTF
CCEEEEECCCCCCHHCCCCEEEEECCCCCEEEEEEEECCC
>Mature Secondary Structure
MKTVKSLILGSAAALLAVGAAQAADLPIKAKAVEYVKVCSLYGAGFYYIPGTDTCIKLGG
CCHHHHHHHCCHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEECC
YLRADVILGGANDYGFNNSQATANGGSNNRLTNYYYSRARTVLNIDTRTATEYGVVRTYA
EEEEEEEEECCCCCCCCCCCEECCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHH
DMIFSYDTGNITNTSTGSAFAAGGTTLGVYNAFIQFAGFTLGRSVSIFDTPWQSYPAGGP
HHHEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCHHCCCEEEEEECCCCCCCCCCC
DTIPGGSNHVTGINQIAYTADFGQGITGSLALENPDSQSNGNGNLWNVNGFAGTGSVNAA
CCCCCCCCCCCCCHHEEEEECCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC
GVITTTPAATVAGNALINGQYGTNALGGTRSPDIVGALRVDQAWGLFQLSAAAHDIHPAY
EEEEECCCHHHCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECHHHHCCCEE
YGGSEVTGHPSDKWGWAVQAALSIKNIPTGPGDSINLQAVYTDGMTRENFQVLFPQQFVM
ECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEECCCEEEE
FSGTGVAGAYQSVGFAGISDGVFGAGGSIETTKSWGFRGGYTHNWNPNWATAIYGGYAGL
EECCCCCCHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCC
SYTSNAKALICANFVAAYGAATATCNPDFNFGVVGINTVWTPVKNLAFTADLSWSRLDQK
EECCCCCEEEEHHHHHHHCCCEEECCCCCCEEEEECCHHHHCHHHEEEEECCCHHHCCCC
YTGTIAVPASSYSTFAKPAATYELKDQNSLTLMLRAQRTF
CCEEEEECCCCCCHHCCCCEEEEECCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA