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The map label for this gene is omp2b [H]

Identifier: 146341391

GI number: 146341391

Start: 4678319

End: 4679812

Strand: Reverse

Name: omp2b [H]

Synonym: BRADO4478

Alternate gene names: 146341391

Gene position: 4679812-4678319 (Counterclockwise)

Preceding gene: 146341392

Following gene: 146341390

Centisome position: 62.76

GC content: 63.32

Gene sequence:

>1494_bases
ATGAAGACGGTGAAGAGCCTTATACTTGGCTCGGCGGCGGCGCTGGTGCTTGCTGTCGGTGGAGCTCAGGCCGCCGACCT
TCCGATCAAGGCGAAGCCGATCGAGTATGTGCGGGTGTGCTCGCTGTATGGCGCGGGCTTCTTCTACATTCCCGGCACCG
ACACGTGCATCAAGCTGGGCGGCTATCTGCGCGTTGATGCCGCGTTCAACACCAACAACATCTTCCAGAACCAGGCGAAC
GGTACCGGCGGTGCCCGCAACCGGCTCAGCAACTACTACACGACCCGCTCCCGCGCCGACTTGACGATCGATACCCGCAC
GTCGACGGAATATGGCGTCGTCCGCACGTTCTTCGAAGGTGTGTTCCAATTCACCGGCGGGACCGTCTCCGGGTCGAACC
CGACGACCTTTACCGGTGACGCGATCGGCGGTGGCACGCTCGGTGTCTTCAACGCCTTCATTCAGTTCGCCGGCTTCACC
ATGGGTCGAGCCTTGTCGGTTTTCGATGCCCCCTGGGCGAATTATCCCGGCAACAATTTCGACGGCCTGGCCGGTGGCGG
CGGCACCATCACCGGTGTCAACCAGTTCACCTACACTGCCGATTTCGGCTCTGGAATCACGGCAGCGATTTCAGCCCAGG
ATTCCCAGGTGAACTCGCAGACCAACATCTGGAACACGACGGGGCAGACGGCGGCCGGCGTCCTCACCGGCAACTACGGC
ACGACGTCGTTCGGCGGCAACGTGTCTCCCGACATCGTCGGCATGGTGCGCGTCGACCAGGCCTGGGGTCTGGTTCAGGC
GTCGGTCGCGGCTCACGACAACCACACCGCCTTCAACGGTGCCACCGAAGTCACGGGTCATCCGGCTGACAAATGGGGCT
ACGCCGCGCAGGTGGCGTTGTCGGTCAAGAACATCCCGACCGGTGTCGGCGACACGATCAACGTGCAGGGCGTCTACACC
AACGGCGCCAGCCGCTACAATTTCCAGAGCCTCGCACCGATCAACTATGCGATGTATGGCGGCACCAACATGGCCGGTGC
CTACCAGAGCCTCGGCTTCGCCGGCGTCTCCGACTCCGTGTTCGCGACGGGCACTCAGCAGCAGCTGACGACGACCTATG
GTTTCCGCGGTGCCTACACTCACAACTGGGATCCGTTCTGGAACACCGCCGTTTACGGCTCCTATGCCGCCGTGCGTTAC
AACGCCACGGCCAAGGGCCTGATCTGTAACGGCGCAGGCATCGTCGAGCTGAAGATCGCGGCGGCCAACTGCAACCCCGA
CTTCAACATCTCGACGATCGGCCTCATCACCCGCTGGACGCCGGTCAAGAACCTGACGTTCTCGGCCGACGTGGCATGGA
CCCGGCTGGATCAGAAGTTCACCGGAACCGCCGTCGCTCCGGCTGTCGCCGCCGTGGCGAAGCCCGCAGCCACCTACCAG
CTGAAGGACCAGGACTCGGTCTCGATGCTGCTGCGCGCCCAGCGCAACTGGTGA

Upstream 100 bases:

>100_bases
CCAATCGCTGTCACGTTGAGGCCCATAGGAGATCGGACCGGCGCAGGTGGGCGGGCCGTGATCCACACATCGTGACTATG
AGAGCAGTTTGGAGGTTGGA

Downstream 100 bases:

>100_bases
TGCGGGGCGAGTGACGAATCGGATAGCGAATAGGGAGGATGGACGATCATCGTCAGTCTCTCTATTCGCTGTCGCTGGTC
GCGGGCGACCTGCTTGTCCT

Product: putative porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MKTVKSLILGSAAALVLAVGGAQAADLPIKAKPIEYVRVCSLYGAGFFYIPGTDTCIKLGGYLRVDAAFNTNNIFQNQAN
GTGGARNRLSNYYTTRSRADLTIDTRTSTEYGVVRTFFEGVFQFTGGTVSGSNPTTFTGDAIGGGTLGVFNAFIQFAGFT
MGRALSVFDAPWANYPGNNFDGLAGGGGTITGVNQFTYTADFGSGITAAISAQDSQVNSQTNIWNTTGQTAAGVLTGNYG
TTSFGGNVSPDIVGMVRVDQAWGLVQASVAAHDNHTAFNGATEVTGHPADKWGYAAQVALSVKNIPTGVGDTINVQGVYT
NGASRYNFQSLAPINYAMYGGTNMAGAYQSLGFAGVSDSVFATGTQQQLTTTYGFRGAYTHNWDPFWNTAVYGSYAAVRY
NATAKGLICNGAGIVELKIAAANCNPDFNISTIGLITRWTPVKNLTFSADVAWTRLDQKFTGTAVAPAVAAVAKPAATYQ
LKDQDSVSMLLRAQRNW

Sequences:

>Translated_497_residues
MKTVKSLILGSAAALVLAVGGAQAADLPIKAKPIEYVRVCSLYGAGFFYIPGTDTCIKLGGYLRVDAAFNTNNIFQNQAN
GTGGARNRLSNYYTTRSRADLTIDTRTSTEYGVVRTFFEGVFQFTGGTVSGSNPTTFTGDAIGGGTLGVFNAFIQFAGFT
MGRALSVFDAPWANYPGNNFDGLAGGGGTITGVNQFTYTADFGSGITAAISAQDSQVNSQTNIWNTTGQTAAGVLTGNYG
TTSFGGNVSPDIVGMVRVDQAWGLVQASVAAHDNHTAFNGATEVTGHPADKWGYAAQVALSVKNIPTGVGDTINVQGVYT
NGASRYNFQSLAPINYAMYGGTNMAGAYQSLGFAGVSDSVFATGTQQQLTTTYGFRGAYTHNWDPFWNTAVYGSYAAVRY
NATAKGLICNGAGIVELKIAAANCNPDFNISTIGLITRWTPVKNLTFSADVAWTRLDQKFTGTAVAPAVAAVAKPAATYQ
LKDQDSVSMLLRAQRNW
>Mature_497_residues
MKTVKSLILGSAAALVLAVGGAQAADLPIKAKPIEYVRVCSLYGAGFFYIPGTDTCIKLGGYLRVDAAFNTNNIFQNQAN
GTGGARNRLSNYYTTRSRADLTIDTRTSTEYGVVRTFFEGVFQFTGGTVSGSNPTTFTGDAIGGGTLGVFNAFIQFAGFT
MGRALSVFDAPWANYPGNNFDGLAGGGGTITGVNQFTYTADFGSGITAAISAQDSQVNSQTNIWNTTGQTAAGVLTGNYG
TTSFGGNVSPDIVGMVRVDQAWGLVQASVAAHDNHTAFNGATEVTGHPADKWGYAAQVALSVKNIPTGVGDTINVQGVYT
NGASRYNFQSLAPINYAMYGGTNMAGAYQSLGFAGVSDSVFATGTQQQLTTTYGFRGAYTHNWDPFWNTAVYGSYAAVRY
NATAKGLICNGAGIVELKIAAANCNPDFNISTIGLITRWTPVKNLTFSADVAWTRLDQKFTGTAVAPAVAAVAKPAATYQ
LKDQDSVSMLLRAQRNW

Specific function: Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 52239; Mature: 52239

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVKSLILGSAAALVLAVGGAQAADLPIKAKPIEYVRVCSLYGAGFFYIPGTDTCIKLG
CCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEC
GYLRVDAAFNTNNIFQNQANGTGGARNRLSNYYTTRSRADLTIDTRTSTEYGVVRTFFEG
CEEEEEEEECCCCEECCCCCCCCHHHHHHHHHEECCCCCEEEEECCCCCCHHHHHHHHHH
VFQFTGGTVSGSNPTTFTGDAIGGGTLGVFNAFIQFAGFTMGRALSVFDAPWANYPGNNF
HHHHCCCEECCCCCCEEECCCCCCCHHHHHHHHHHHHCCHHHCEEEEECCCCCCCCCCCC
DGLAGGGGTITGVNQFTYTADFGSGITAAISAQDSQVNSQTNIWNTTGQTAAGVLTGNYG
CCCCCCCCEEEECCEEEEEEECCCCEEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCC
TTSFGGNVSPDIVGMVRVDQAWGLVQASVAAHDNHTAFNGATEVTGHPADKWGYAAQVAL
CCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEECCCCCCCCCCCHHCCCEEEEEE
SVKNIPTGVGDTINVQGVYTNGASRYNFQSLAPINYAMYGGTNMAGAYQSLGFAGVSDSV
EEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCE
FATGTQQQLTTTYGFRGAYTHNWDPFWNTAVYGSYAAVRYNATAKGLICNGAGIVELKIA
EECCCCHHHEEECCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCEEEECCCCEEEEEEE
AANCNPDFNISTIGLITRWTPVKNLTFSADVAWTRLDQKFTGTAVAPAVAAVAKPAATYQ
EECCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCCCCCHHHHHHHHHHCCCEEEE
LKDQDSVSMLLRAQRNW
ECCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKTVKSLILGSAAALVLAVGGAQAADLPIKAKPIEYVRVCSLYGAGFFYIPGTDTCIKLG
CCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEC
GYLRVDAAFNTNNIFQNQANGTGGARNRLSNYYTTRSRADLTIDTRTSTEYGVVRTFFEG
CEEEEEEEECCCCEECCCCCCCCHHHHHHHHHEECCCCCEEEEECCCCCCHHHHHHHHHH
VFQFTGGTVSGSNPTTFTGDAIGGGTLGVFNAFIQFAGFTMGRALSVFDAPWANYPGNNF
HHHHCCCEECCCCCCEEECCCCCCCHHHHHHHHHHHHCCHHHCEEEEECCCCCCCCCCCC
DGLAGGGGTITGVNQFTYTADFGSGITAAISAQDSQVNSQTNIWNTTGQTAAGVLTGNYG
CCCCCCCCEEEECCEEEEEEECCCCEEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCC
TTSFGGNVSPDIVGMVRVDQAWGLVQASVAAHDNHTAFNGATEVTGHPADKWGYAAQVAL
CCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEECCCCCCCCCCCHHCCCEEEEEE
SVKNIPTGVGDTINVQGVYTNGASRYNFQSLAPINYAMYGGTNMAGAYQSLGFAGVSDSV
EEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCE
FATGTQQQLTTTYGFRGAYTHNWDPFWNTAVYGSYAAVRYNATAKGLICNGAGIVELKIA
EECCCCHHHEEECCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCEEEECCCCEEEEEEE
AANCNPDFNISTIGLITRWTPVKNLTFSADVAWTRLDQKFTGTAVAPAVAAVAKPAATYQ
EECCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCCCCCHHHHHHHHHHCCCEEEE
LKDQDSVSMLLRAQRNW
ECCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2509359 [H]