Click here to switch to the map view.

The map label for this gene is nusB [H]

Identifier: 146341341

GI number: 146341341

Start: 4629626

End: 4630132

Strand: Reverse

Name: nusB [H]

Synonym: BRADO4425

Alternate gene names: 146341341

Gene position: 4630132-4629626 (Counterclockwise)

Preceding gene: 146341342

Following gene: 146341340

Centisome position: 62.09

GC content: 68.44

Gene sequence:

>507_bases
ATGGCCGAGAACAAACCCTTCAGGGGCCCGATCCGCGCCAACACCGACCGCAAGGCCAACCGCCGCGGCGCCGCGCGCCT
TGCCGCCGTGCAGGCGCTCTACCAGATGGACATCGCCGGCGCCGGCATCAACGACGTGCTGGCCGAGTTCGAGAGCCACT
GGCTCGGCAATGAGGTCGAGGGCGAGCAGTATCTCCCTGCGGAGGCCGCCTTCTTCCGCGACATCGTCTCCGGCGTGGTG
CGCGACCAGACCAAGATCGATCCGGTGCTGGACACCGCGCTGGAGCGCGGCTGGCCGCTGCAGCGGATCGAGGCCATCCT
GCGCGCAGTGCTGCGCGCCGGAGCCTATGAGCTGGAGCGGCGCAAGGACGTGCCGGCCAAGGTCGTCGTGTCCGAATATG
TCGACATCGCCCACGCCTTCGTCGAGCGCGACGAGACCGGCATGGTCAACGCCGTGCTGGAGCAACTGGCGCGTCAGTAT
CGCGGCGACGAGATGGGACCGAAGTAG

Upstream 100 bases:

>100_bases
TGGGCGCGTGCCCGCGTCTCCGAGATGAACAAGGGCGGCGATGCCGCCCGCGCTGCGCTCGCCGTGCTGCGCATCAAGCG
CCGCCTGTCGCGAGGCTGAG

Downstream 100 bases:

>100_bases
CGATGCAAGTCGGCGCAGGATTCGGCGAAAGAGTCTTGCGGATCGGCAATTGGTCAGCGCCTTCACTCCGCTGTCATCAC
CCGCGAAAGCGGGTGATCCA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MAENKPFRGPIRANTDRKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGNEVEGEQYLPAEAAFFRDIVSGVV
RDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEYVDIAHAFVERDETGMVNAVLEQLARQY
RGDEMGPK

Sequences:

>Translated_168_residues
MAENKPFRGPIRANTDRKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGNEVEGEQYLPAEAAFFRDIVSGVV
RDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEYVDIAHAFVERDETGMVNAVLEQLARQY
RGDEMGPK
>Mature_167_residues
AENKPFRGPIRANTDRKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGNEVEGEQYLPAEAAFFRDIVSGVVR
DQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEYVDIAHAFVERDETGMVNAVLEQLARQYR
GDEMGPK

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=130, Percent_Identity=31.5384615384615, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 18778; Mature: 18646

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENKPFRGPIRANTDRKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGNEVE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
GEQYLPAEAAFFRDIVSGVVRDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELER
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
RKDVPAKVVVSEYVDIAHAFVERDETGMVNAVLEQLARQYRGDEMGPK
HHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AENKPFRGPIRANTDRKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGNEVE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
GEQYLPAEAAFFRDIVSGVVRDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELER
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
RKDVPAKVVVSEYVDIAHAFVERDETGMVNAVLEQLARQYRGDEMGPK
HHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA