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The map label for this gene is ihfA [H]

Identifier: 146341332

GI number: 146341332

Start: 4619504

End: 4619863

Strand: Reverse

Name: ihfA [H]

Synonym: BRADO4416

Alternate gene names: 146341332

Gene position: 4619863-4619504 (Counterclockwise)

Preceding gene: 146341333

Following gene: 146341331

Centisome position: 61.96

GC content: 62.78

Gene sequence:

>360_bases
ATGGCGGGAACGGGAAAAACAGTTACACGGGTCGATCTGTGCGAGGCGGTCTACCAGAAGGTGGGCCTGTCGCGGACGGA
GTCGTCCGCCTTCGTCGAGCTGGTCCTGAAGGAGATCACCGACTGCCTGGAGCGTGGCGAGACGGTGAAGCTGTCGTCGT
TTGGGTCTTTCATGGTGCGCAAGAAGGGGCAGCGCATCGGCCGCAACCCCAAGACCGGCACCGAGGTGCCGATCTCGCCG
CGGCGCGTGATGGTGTTCAAGCCATCGGCCATCCTCAAGCAGCGCATCAACGGCCAGCAGGCCAACGGCAAGATGAACGG
CGAATCCGCTCCCTCTGAGTTCAGCGCCGAGACTGAATAG

Upstream 100 bases:

>100_bases
GGTGCCCAGCCCGCCAGTTCGGTTCACGCTGCTGTTGACCATTGCCGCTTAACCTCTTAATTTCCGGACCGAATTATTCG
CCGGGAGTTTGGGGCAGGCG

Downstream 100 bases:

>100_bases
CGGTCTGCCCGGCTTCAACCGCGGTCCGGCCCCAGGCCGGACGGAATGCGTCATCGTCAGCGTAGCCTAGCGTCACATCT
TGTCAGCACGATCGAAGGGG

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 119; Mature: 118

Protein sequence:

>119_residues
MAGTGKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRIGRNPKTGTEVPISP
RRVMVFKPSAILKQRINGQQANGKMNGESAPSEFSAETE

Sequences:

>Translated_119_residues
MAGTGKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRIGRNPKTGTEVPISP
RRVMVFKPSAILKQRINGQQANGKMNGESAPSEFSAETE
>Mature_118_residues
AGTGKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRIGRNPKTGTEVPISPR
RVMVFKPSAILKQRINGQQANGKMNGESAPSEFSAETE

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=90, Percent_Identity=47.7777777777778, Blast_Score=96, Evalue=9e-22,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=34.8314606741573, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 13010; Mature: 12879

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGTGKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVR
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHH
KKGQRIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQQANGKMNGESAPSEFSAETE
HHHHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGTGKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVR
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHH
KKGQRIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQQANGKMNGESAPSEFSAETE
HHHHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA