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The map label for this gene is yebA [H]

Identifier: 146340486

GI number: 146340486

Start: 3716865

End: 3718091

Strand: Reverse

Name: yebA [H]

Synonym: BRADO3528

Alternate gene names: 146340486

Gene position: 3718091-3716865 (Counterclockwise)

Preceding gene: 146340487

Following gene: 146340485

Centisome position: 49.86

GC content: 68.46

Gene sequence:

>1227_bases
GTGCATGCCGGCAAGCAGGTGCGCATCGGCCCGGTCGTGTTCTGGATCGTGGTCGGCACCGTCAGCCTGCTCGGCATCTG
GTCGGCGGCGACCGCGACCTATTTTGCGTTCCGCGATGACGTGCTGACGCGGCTGATCGCGCGCCAGGCCGAGATGCAAT
ACGCCTATGAGGATCGCATCGCCGAGCTGCGCGCCAAGGTCGACCGCGCCACCAGCCGCCAGCTTCTCGATCAGGAGCAG
TTCGATCAGAAGCTCGACCAGATCCTGAAACGCCAGAGCGCGCTCGAAGGCCGCGCCACCGCGCTCGGCAGCATGCCCGA
CATCACCGGCTCGATCCGCATGCCGGCGCGCGCGCCGGCCACGATCGAGCCCACAGCCGCGCCGTCGACACCGAAGCCGT
CGCCGATCAGCGACACCGTCATCTTCACCGCGCCGCCGGACCGCGAGGCGCGGCTCGAATCGCGCAGCCCCGTTCTGGCC
AATGTGCAGCCGAGCCCATCCACCAAGCTCGCCGGCGTTGACAACGTTCTGACGCGGCTGACGCGCTCGCTCGACCAGGT
CGAGGCGCGCCAGGTCGCGATGCTCGCCTCGGCCGAGGAGACGCTGGAATCCAAGCTGCGCCGGATGCGCGGCGTGATCA
CCGATCTCGGGCTGGACATGGGCCAGCTCGAAGCCGCTGCGCCGAAGGGCGGCATGGGCGGCCCATTCGTGCCGGTCAAG
CTCGGCGCCGAATCCGGTCCGTTCGAGCGTCAGCTCTATCGCATCAGCATCACCCGCGCGCAGGTCGAAAAGATGAATCG
CACGCTGGCGCTGGTGCCCTATCGCAAGCCGGTCATCGGCGAGGTCGAGTTCACCTCGGGCTTCGGCGTGCGCTCCGATC
CGTTCCTCGGCCGTCCCGCCATGCACACCGGCCTCGATTTCCGCGCCGCGACCGGCGATCCCGTGCGCGTCACCGCCAAC
GGCAAGGTGGTGAACGCCGGCTGGTCGGGCGGCTATGGCCGCATGGTCGAGGTCGATCACGGCAACGGCCTCTCCACGCG
CTACGGCCATCTCTCCGAGATCAACGTCAAGATCGGCCAGCAGGTGAAGATCGGCGACATCGTCGGCGAGGTCGGCTCGA
CTGGCCGCTCGACCGGCCCGCATCTGCACTACGAGACCCGCATCGACGGCGAAGCCGTCGACCCGCAGAAGTTTTTGCGC
GCAGGGATCCGGTTGAGCGCCGGCTAG

Upstream 100 bases:

>100_bases
CCATCCTCATGATCGCGGGCACGCTCACCACCGGCGCGCGCCCGCGCCGCACCCAGTCGCAGCTCCGTCTGCTGCCGCGT
CGCAGAGCGACTACACGCTG

Downstream 100 bases:

>100_bases
AACAGCGGCGGCCGAGCTGTTGCGCGCTGACCGCCAGACGGTATGCTGACAGCACGAATGAATGGCTTCTCGACGCCATT
GTCCTGAAGCTTGGCCCGCG

Product: putative metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MHAGKQVRIGPVVFWIVVGTVSLLGIWSAATATYFAFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRATSRQLLDQEQ
FDQKLDQILKRQSALEGRATALGSMPDITGSIRMPARAPATIEPTAAPSTPKPSPISDTVIFTAPPDREARLESRSPVLA
NVQPSPSTKLAGVDNVLTRLTRSLDQVEARQVAMLASAEETLESKLRRMRGVITDLGLDMGQLEAAAPKGGMGGPFVPVK
LGAESGPFERQLYRISITRAQVEKMNRTLALVPYRKPVIGEVEFTSGFGVRSDPFLGRPAMHTGLDFRAATGDPVRVTAN
GKVVNAGWSGGYGRMVEVDHGNGLSTRYGHLSEINVKIGQQVKIGDIVGEVGSTGRSTGPHLHYETRIDGEAVDPQKFLR
AGIRLSAG

Sequences:

>Translated_408_residues
MHAGKQVRIGPVVFWIVVGTVSLLGIWSAATATYFAFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRATSRQLLDQEQ
FDQKLDQILKRQSALEGRATALGSMPDITGSIRMPARAPATIEPTAAPSTPKPSPISDTVIFTAPPDREARLESRSPVLA
NVQPSPSTKLAGVDNVLTRLTRSLDQVEARQVAMLASAEETLESKLRRMRGVITDLGLDMGQLEAAAPKGGMGGPFVPVK
LGAESGPFERQLYRISITRAQVEKMNRTLALVPYRKPVIGEVEFTSGFGVRSDPFLGRPAMHTGLDFRAATGDPVRVTAN
GKVVNAGWSGGYGRMVEVDHGNGLSTRYGHLSEINVKIGQQVKIGDIVGEVGSTGRSTGPHLHYETRIDGEAVDPQKFLR
AGIRLSAG
>Mature_408_residues
MHAGKQVRIGPVVFWIVVGTVSLLGIWSAATATYFAFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRATSRQLLDQEQ
FDQKLDQILKRQSALEGRATALGSMPDITGSIRMPARAPATIEPTAAPSTPKPSPISDTVIFTAPPDREARLESRSPVLA
NVQPSPSTKLAGVDNVLTRLTRSLDQVEARQVAMLASAEETLESKLRRMRGVITDLGLDMGQLEAAAPKGGMGGPFVPVK
LGAESGPFERQLYRISITRAQVEKMNRTLALVPYRKPVIGEVEFTSGFGVRSDPFLGRPAMHTGLDFRAATGDPVRVTAN
GKVVNAGWSGGYGRMVEVDHGNGLSTRYGHLSEINVKIGQQVKIGDIVGEVGSTGRSTGPHLHYETRIDGEAVDPQKFLR
AGIRLSAG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=122, Percent_Identity=46.7213114754098, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87082297, Length=96, Percent_Identity=39.5833333333333, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=34.3434343434343, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 44164; Mature: 44164

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAGKQVRIGPVVFWIVVGTVSLLGIWSAATATYFAFRDDVLTRLIARQAEMQYAYEDRI
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELRAKVDRATSRQLLDQEQFDQKLDQILKRQSALEGRATALGSMPDITGSIRMPARAPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEECCCCCCC
TIEPTAAPSTPKPSPISDTVIFTAPPDREARLESRSPVLANVQPSPSTKLAGVDNVLTRL
CCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHH
TRSLDQVEARQVAMLASAEETLESKLRRMRGVITDLGLDMGQLEAAAPKGGMGGPFVPVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEE
LGAESGPFERQLYRISITRAQVEKMNRTLALVPYRKPVIGEVEFTSGFGVRSDPFLGRPA
ECCCCCCCHHEEEEEEHHHHHHHHHCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCC
MHTGLDFRAATGDPVRVTANGKVVNAGWSGGYGRMVEVDHGNGLSTRYGHLSEINVKIGQ
HHCCCCEEECCCCCEEEEECCEEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECC
QVKIGDIVGEVGSTGRSTGPHLHYETRIDGEAVDPQKFLRAGIRLSAG
EEEHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCEECCC
>Mature Secondary Structure
MHAGKQVRIGPVVFWIVVGTVSLLGIWSAATATYFAFRDDVLTRLIARQAEMQYAYEDRI
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELRAKVDRATSRQLLDQEQFDQKLDQILKRQSALEGRATALGSMPDITGSIRMPARAPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEECCCCCCC
TIEPTAAPSTPKPSPISDTVIFTAPPDREARLESRSPVLANVQPSPSTKLAGVDNVLTRL
CCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHH
TRSLDQVEARQVAMLASAEETLESKLRRMRGVITDLGLDMGQLEAAAPKGGMGGPFVPVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEE
LGAESGPFERQLYRISITRAQVEKMNRTLALVPYRKPVIGEVEFTSGFGVRSDPFLGRPA
ECCCCCCCHHEEEEEEHHHHHHHHHCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCC
MHTGLDFRAATGDPVRVTANGKVVNAGWSGGYGRMVEVDHGNGLSTRYGHLSEINVKIGQ
HHCCCCEEECCCCCEEEEECCEEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECC
QVKIGDIVGEVGSTGRSTGPHLHYETRIDGEAVDPQKFLRAGIRLSAG
EEEHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]