| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is pepA [H]
Identifier: 146340305
GI number: 146340305
Start: 3525813
End: 3527312
Strand: Direct
Name: pepA [H]
Synonym: BRADO3328
Alternate gene names: 146340305
Gene position: 3525813-3527312 (Clockwise)
Preceding gene: 146340296
Following gene: 146340306
Centisome position: 47.28
GC content: 65.87
Gene sequence:
>1500_bases ATGTCCGACACCGTCAAGGTCGGCTTCGTCCCGCTGTCGGCCGCTCCCCGCGGCATCGTGGCGGCGTTTTGTGACGACTC GCTGCGGCTAGGAGCCGCGACCGACAAGGCGCTCGGGGGAGCGGCGGAGCTGATCAAGCGCGCGGCCGGCGCAGCGCGGT TCAAGGGCAAGGACGGCGCGGTGCTCGATCTGCTGGCGCCCGAGGGAATTAAGATTCAGCGCTTGATCGTGATCGGAACG GGCAAGGGCGGCGATCACAAGGAACGGGATTTTCTCAAATATGGCGGGACTTTAACGGGAAAGCTCAATCCCGGAACTGA AGCCGTGACGGTGCTGGCCGAGCTGCCGGCGGGGCACATGACGCCCGACCAGGTCAGCTCCCTGGCTGCCGGCATGAGGC TTCGGGCCTATCGATTCGACCGCTACAAGACCAAGAAGAAGGATGACGACGGCAGCGTCAGCGCGACCGTCTCGATCGCC GTCGCCGACGTCGCCGCGGCCAAGAAGGCCTTCGCGCCCCGCGCCCATGTGACCGACGGCGTGATCCTTGCCCGTGACCT CGTCAACGAGCCGCCGAACGTCCTCTACCCGGAGGAGTTCGCCAAGCGCGCTGCCGAGCTGCGCAAGCTCGGCGTCACCG TCGAGATTCTCGACGTGCCCGCGATGAAGAAGCTCGGCATGGGCGCGCTGCTCGGCGTCGGCCAGGGTTCGGCGCGGCCG AGCCGCACGGTGGTGATGCGATACAATGGCGGCAAGAAGGGCGACCAGCCGGTGGCGTTCATCGGCAAGGGCGTCTGCTT CGACACCGGCGGCATCTCGATCAAGCCGGCTGGCTCGATGGAGGACATGAAGGGCGACATGGGCGGCGCCGCCTGCGTCG TCGGTCTGATGCACGCGCTGGCGGCGCGCAAAGCCAAAGCCAATGTGATCGGCGCGATCGGCCTGGTCGAGAACATGCCG GACGGCAACGCCCAGCGCCCGGGCGACATCGTCACCTCGATGTCCGGGCAGACCATCGAGATCATCAACACCGACGCGGA AGGGCGGCTCGTGCTCGCCGATGTGCTCTGGTACGTCGCGACCAAGTACAAGCCGAAATTCATGATCGATCTGGCGACGC TGACCGGTGCGATCATGGTCGCGCTCGGCACCGAGCATGCCGGCCTGTTCGCCAACAATGACGATCTGGCCGAGAAGCTG CTGAAGGCGGGGAAGGAGACCGGCGAGAAGGTCTGGCGCATGCCGCTCGGCTCCGAATACGACAAGCTGATCGATTCGCA ATTCGCCGACATGAAGAACACCGGCGGCCGCCACGGCGGCTCGATCACGGCCGCGCAATTCCTGCAGCGCTTCGTCAACG ACACGCCCTGGGCGCATCTCGACATCGCCGGCACCGCGATGGGTGCGCCGAAGTCGGAGATCAACCAGAGCTGGGGCTCC GGCTACGGCGTGCGCCTGCTCGACCGTCTCGTCTGGGATTCCTACGAAGCAAAATCGTAA
Upstream 100 bases:
>100_bases CTGCCAAGTTGGGTTCCGAACTGCCGCCATCCCCGTCTGTCCGCTCGGATTTCGGCCCGGTCGCGGCGGCTCTCATGTCG AAAATTTGGAGGTTTGCTTG
Downstream 100 bases:
>100_bases GGGTCGACGGCACGCATGACCGAAGTCCTGTTCTATCATCTGCAGAGCATGACGCTGGAAGGCGTGCTGCCGCCGCTGCT CGAGAAGTCGCTCGAGCGCG
Product: leucyl aminopeptidase
Products: NA
Alternate protein names: Leucine aminopeptidase; LAP; Leucyl aminopeptidase [H]
Number of amino acids: Translated: 499; Mature: 498
Protein sequence:
>499_residues MSDTVKVGFVPLSAAPRGIVAAFCDDSLRLGAATDKALGGAAELIKRAAGAARFKGKDGAVLDLLAPEGIKIQRLIVIGT GKGGDHKERDFLKYGGTLTGKLNPGTEAVTVLAELPAGHMTPDQVSSLAAGMRLRAYRFDRYKTKKKDDDGSVSATVSIA VADVAAAKKAFAPRAHVTDGVILARDLVNEPPNVLYPEEFAKRAAELRKLGVTVEILDVPAMKKLGMGALLGVGQGSARP SRTVVMRYNGGKKGDQPVAFIGKGVCFDTGGISIKPAGSMEDMKGDMGGAACVVGLMHALAARKAKANVIGAIGLVENMP DGNAQRPGDIVTSMSGQTIEIINTDAEGRLVLADVLWYVATKYKPKFMIDLATLTGAIMVALGTEHAGLFANNDDLAEKL LKAGKETGEKVWRMPLGSEYDKLIDSQFADMKNTGGRHGGSITAAQFLQRFVNDTPWAHLDIAGTAMGAPKSEINQSWGS GYGVRLLDRLVWDSYEAKS
Sequences:
>Translated_499_residues MSDTVKVGFVPLSAAPRGIVAAFCDDSLRLGAATDKALGGAAELIKRAAGAARFKGKDGAVLDLLAPEGIKIQRLIVIGT GKGGDHKERDFLKYGGTLTGKLNPGTEAVTVLAELPAGHMTPDQVSSLAAGMRLRAYRFDRYKTKKKDDDGSVSATVSIA VADVAAAKKAFAPRAHVTDGVILARDLVNEPPNVLYPEEFAKRAAELRKLGVTVEILDVPAMKKLGMGALLGVGQGSARP SRTVVMRYNGGKKGDQPVAFIGKGVCFDTGGISIKPAGSMEDMKGDMGGAACVVGLMHALAARKAKANVIGAIGLVENMP DGNAQRPGDIVTSMSGQTIEIINTDAEGRLVLADVLWYVATKYKPKFMIDLATLTGAIMVALGTEHAGLFANNDDLAEKL LKAGKETGEKVWRMPLGSEYDKLIDSQFADMKNTGGRHGGSITAAQFLQRFVNDTPWAHLDIAGTAMGAPKSEINQSWGS GYGVRLLDRLVWDSYEAKS >Mature_498_residues SDTVKVGFVPLSAAPRGIVAAFCDDSLRLGAATDKALGGAAELIKRAAGAARFKGKDGAVLDLLAPEGIKIQRLIVIGTG KGGDHKERDFLKYGGTLTGKLNPGTEAVTVLAELPAGHMTPDQVSSLAAGMRLRAYRFDRYKTKKKDDDGSVSATVSIAV ADVAAAKKAFAPRAHVTDGVILARDLVNEPPNVLYPEEFAKRAAELRKLGVTVEILDVPAMKKLGMGALLGVGQGSARPS RTVVMRYNGGKKGDQPVAFIGKGVCFDTGGISIKPAGSMEDMKGDMGGAACVVGLMHALAARKAKANVIGAIGLVENMPD GNAQRPGDIVTSMSGQTIEIINTDAEGRLVLADVLWYVATKYKPKFMIDLATLTGAIMVALGTEHAGLFANNDDLAEKLL KAGKETGEKVWRMPLGSEYDKLIDSQFADMKNTGGRHGGSITAAQFLQRFVNDTPWAHLDIAGTAMGAPKSEINQSWGSG YGVRLLDRLVWDSYEAKS
Specific function: Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides [H]
COG id: COG0260
COG function: function code E; Leucyl aminopeptidase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M17 family [H]
Homologues:
Organism=Homo sapiens, GI41393561, Length=342, Percent_Identity=41.5204678362573, Blast_Score=234, Evalue=1e-61, Organism=Homo sapiens, GI47155554, Length=320, Percent_Identity=35.625, Blast_Score=162, Evalue=9e-40, Organism=Escherichia coli, GI1790710, Length=422, Percent_Identity=41.4691943127962, Blast_Score=297, Evalue=1e-81, Organism=Escherichia coli, GI87082123, Length=336, Percent_Identity=37.202380952381, Blast_Score=190, Evalue=1e-49, Organism=Caenorhabditis elegans, GI17556903, Length=313, Percent_Identity=33.5463258785943, Blast_Score=143, Evalue=2e-34, Organism=Caenorhabditis elegans, GI17565172, Length=255, Percent_Identity=27.843137254902, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI20129969, Length=287, Percent_Identity=34.4947735191638, Blast_Score=194, Evalue=2e-49, Organism=Drosophila melanogaster, GI21355725, Length=282, Percent_Identity=38.2978723404255, Blast_Score=187, Evalue=2e-47, Organism=Drosophila melanogaster, GI24662227, Length=287, Percent_Identity=35.191637630662, Blast_Score=187, Evalue=2e-47, Organism=Drosophila melanogaster, GI24661038, Length=282, Percent_Identity=38.6524822695035, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI161077148, Length=287, Percent_Identity=35.5400696864112, Blast_Score=186, Evalue=5e-47, Organism=Drosophila melanogaster, GI20130057, Length=287, Percent_Identity=35.5400696864112, Blast_Score=186, Evalue=5e-47, Organism=Drosophila melanogaster, GI21355645, Length=287, Percent_Identity=31.3588850174216, Blast_Score=176, Evalue=3e-44, Organism=Drosophila melanogaster, GI24662223, Length=287, Percent_Identity=31.3588850174216, Blast_Score=176, Evalue=3e-44, Organism=Drosophila melanogaster, GI20129963, Length=348, Percent_Identity=32.4712643678161, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI19922386, Length=287, Percent_Identity=34.8432055749129, Blast_Score=172, Evalue=3e-43, Organism=Drosophila melanogaster, GI21357381, Length=317, Percent_Identity=34.0694006309148, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI221379063, Length=317, Percent_Identity=34.0694006309148, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI221379062, Length=317, Percent_Identity=34.0694006309148, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI24646701, Length=178, Percent_Identity=30.8988764044944, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI24646703, Length=178, Percent_Identity=30.8988764044944, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI21358201, Length=178, Percent_Identity=30.8988764044944, Blast_Score=81, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011356 - InterPro: IPR000819 - InterPro: IPR023042 - InterPro: IPR008283 [H]
Pfam domain/function: PF00883 Peptidase_M17; PF02789 Peptidase_M17_N [H]
EC number: =3.4.11.1; =3.4.11.10 [H]
Molecular weight: Translated: 52597; Mature: 52466
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: PS00631 CYTOSOL_AP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTVKVGFVPLSAAPRGIVAAFCDDSLRLGAATDKALGGAAELIKRAAGAARFKGKDGA CCCCEEEEEEECCCCCCCEEEEECCCCCEECCCCCHHCCHHHHHHHHHHCCCEECCCCCC VLDLLAPEGIKIQRLIVIGTGKGGDHKERDFLKYGGTLTGKLNPGTEAVTVLAELPAGHM EEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHCCEEEECCCCCHHHHHHEECCCCCCC TPDQVSSLAAGMRLRAYRFDRYKTKKKDDDGSVSATVSIAVADVAAAKKAFAPRAHVTDG CHHHHHHHHHHHHHEEEHHHHHHCCCCCCCCCEEEEEEEEEHHHHHHHHHCCCCCCCCCC VILARDLVNEPPNVLYPEEFAKRAAELRKLGVTVEILDVPAMKKLGMGALLGVGQGSARP HHEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHCCCCCEEECCCCCCCC SRTVVMRYNGGKKGDQPVAFIGKGVCFDTGGISIKPAGSMEDMKGDMGGAACVVGLMHAL CEEEEEEECCCCCCCCCEEEEECCEEEECCCEEECCCCCHHHHCCCCCHHHHHHHHHHHH AARKAKANVIGAIGLVENMPDGNAQRPGDIVTSMSGQTIEIINTDAEGRLVLADVLWYVA HHHHHHHHHEEEHHHHHCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHH TKYKPKFMIDLATLTGAIMVALGTEHAGLFANNDDLAEKLLKAGKETGEKVWRMPLGSEY HCCCCEEEEEHHHHHCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHH DKLIDSQFADMKNTGGRHGGSITAAQFLQRFVNDTPWAHLDIAGTAMGAPKSEINQSWGS HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCC GYGVRLLDRLVWDSYEAKS CCHHHHHHHHHHCCCCCCC >Mature Secondary Structure SDTVKVGFVPLSAAPRGIVAAFCDDSLRLGAATDKALGGAAELIKRAAGAARFKGKDGA CCCEEEEEEECCCCCCCEEEEECCCCCEECCCCCHHCCHHHHHHHHHHCCCEECCCCCC VLDLLAPEGIKIQRLIVIGTGKGGDHKERDFLKYGGTLTGKLNPGTEAVTVLAELPAGHM EEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHCCEEEECCCCCHHHHHHEECCCCCCC TPDQVSSLAAGMRLRAYRFDRYKTKKKDDDGSVSATVSIAVADVAAAKKAFAPRAHVTDG CHHHHHHHHHHHHHEEEHHHHHHCCCCCCCCCEEEEEEEEEHHHHHHHHHCCCCCCCCCC VILARDLVNEPPNVLYPEEFAKRAAELRKLGVTVEILDVPAMKKLGMGALLGVGQGSARP HHEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHCCCCCEEECCCCCCCC SRTVVMRYNGGKKGDQPVAFIGKGVCFDTGGISIKPAGSMEDMKGDMGGAACVVGLMHAL CEEEEEEECCCCCCCCCEEEEECCEEEECCCEEECCCCCHHHHCCCCCHHHHHHHHHHHH AARKAKANVIGAIGLVENMPDGNAQRPGDIVTSMSGQTIEIINTDAEGRLVLADVLWYVA HHHHHHHHHEEEHHHHHCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHH TKYKPKFMIDLATLTGAIMVALGTEHAGLFANNDDLAEKLLKAGKETGEKVWRMPLGSEY HCCCCEEEEEHHHHHCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHH DKLIDSQFADMKNTGGRHGGSITAAQFLQRFVNDTPWAHLDIAGTAMGAPKSEINQSWGS HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCC GYGVRLLDRLVWDSYEAKS CCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA