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The map label for this gene is rtcB [C]

Identifier: 146339885

GI number: 146339885

Start: 3089035

End: 3090375

Strand: Direct

Name: rtcB [C]

Synonym: BRADO2887

Alternate gene names: 146339885

Gene position: 3089035-3090375 (Clockwise)

Preceding gene: 146339884

Following gene: 146339886

Centisome position: 41.43

GC content: 67.19

Gene sequence:

>1341_bases
ATGAGAGCGGATCCCTATCAGGAGCGTGCGCGGCAGCTGGCGATCGAAGCCGGCCTCGATCCGGATGCGCGGATCGAGCG
GCCCGGGCAGCGCTCGATGCCGCTGTGGTGCACGTTCCGCGATGCGGCGCGCAAGGAGCAGCTCGCGCGCGAGGCCGAGG
CGCTGGCCGATACGGTCGCGAGCCGGCCGCAGGCGGCGCGGTATCAGAACAGCCCGCTGAAGGTGTTCGGGAGCCACGAG
GATGCGACGATCGCCCAGATGCGCAACTGCATGAGCGTTGGCAACGCTGTCGCCGGCGTGATCTGTGCCGACGGTCATCT
CGGCTATGCGCAGCCTGTCGGGGGTGTGATCGCCTATGAGAAGCAGATCAGCATCTCCGGCGTCGGCTTCGACATCGGTT
GCGGCAACATGGCGGTGCGGCTCGACACCCAGTTCAGCGCGATCGAGGACCAGGTCGGCACGATCATCAAGGATGTGTCG
AAGGTGATATCGTTCGGCGTCGGCCGCAAGAACGCCGAGCGCGTCGAGCATGAGCTGTTCGATGATGCCGATGCTTGGCG
TGCGTCCGACATGGATGCGTACCGGCAGAAGGCGGTCGGGCAGCTCGGCACGGTCGGCTCGGGCAACCATTATGTCGACC
TGATGCGCGACGAGGACGGCTCCGTCTGGATCGGCGTGCATTTCGGTAGCCGTGGTCTCGGCCACACCTCGGCGACGCGC
TACCTCAAGGCGGCCGGCGGCAAGGACGGCATGAACGTGCCGCCCGCTGTCGTCGACGAGGACTCCGAGGTCGGGCAGCG
CTACATCGCCGCGATGCAGCTCGCCGGGCGCTACGCCTATGCGGGTCGCGAGTGGGTAGTGGAGCGCGTTCGCCAGATCA
TCGGCGGTGCGGTCACCGACAGCGTGCACAACCACCATAACTACGCATGGCGTGAGACCCACGACGGACGTGACCTGTGG
GTGGTGCGCAAGGGCGCCACGCCGGCATTTCCGGGCCAGCGCGGCTTCGTCGGCGGCTCGATGGGCGACGACGCCGTCAT
CATCGAGGGCGTGGAGTCGGAGGAGGCCAAGGCTTCGTTGTACTCCACCGTGCACGGAGCTGGTCGCTTGTTCGGCCGGC
GTGAGGCGAAGCGACGCTTCACCCGCGCCGAGATGGACGCGTGGCTGCAGAGCCGCGGCGTTACCCTGGTGGGTGCCGAC
CTCGACGAGAGCCCGATGGCTTATCGACGCCTGCCCGAGGTGCTGGCCGAGCATGCAGGCTCGGTGAAGGTCATGCATAC
GCTTCGGCCGTTCGCCGTGGCGATGGCGGGCGAGGGCGAGTTCGATCCGTTCAAGGATTGA

Upstream 100 bases:

>100_bases
CGTGTCAACGAAGCTGCGCGGCGTTGCGTCACGTAGATCTCGGGCAAATGTGCCGCGTCGGCGTTGCCGTGCCGGCATTC
GAGTGAGAGAGGAGAATCAG

Downstream 100 bases:

>100_bases
GCTCGCCTGTGTGCCCCGCATGAGCGCAAGCGACATGCGGGTTCATCTTTGCGGCACGTCAGTTTCCGGATGTCGCAGCC
GCTCGCGCCCTGGCGGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MRADPYQERARQLAIEAGLDPDARIERPGQRSMPLWCTFRDAARKEQLAREAEALADTVASRPQAARYQNSPLKVFGSHE
DATIAQMRNCMSVGNAVAGVICADGHLGYAQPVGGVIAYEKQISISGVGFDIGCGNMAVRLDTQFSAIEDQVGTIIKDVS
KVISFGVGRKNAERVEHELFDDADAWRASDMDAYRQKAVGQLGTVGSGNHYVDLMRDEDGSVWIGVHFGSRGLGHTSATR
YLKAAGGKDGMNVPPAVVDEDSEVGQRYIAAMQLAGRYAYAGREWVVERVRQIIGGAVTDSVHNHHNYAWRETHDGRDLW
VVRKGATPAFPGQRGFVGGSMGDDAVIIEGVESEEAKASLYSTVHGAGRLFGRREAKRRFTRAEMDAWLQSRGVTLVGAD
LDESPMAYRRLPEVLAEHAGSVKVMHTLRPFAVAMAGEGEFDPFKD

Sequences:

>Translated_446_residues
MRADPYQERARQLAIEAGLDPDARIERPGQRSMPLWCTFRDAARKEQLAREAEALADTVASRPQAARYQNSPLKVFGSHE
DATIAQMRNCMSVGNAVAGVICADGHLGYAQPVGGVIAYEKQISISGVGFDIGCGNMAVRLDTQFSAIEDQVGTIIKDVS
KVISFGVGRKNAERVEHELFDDADAWRASDMDAYRQKAVGQLGTVGSGNHYVDLMRDEDGSVWIGVHFGSRGLGHTSATR
YLKAAGGKDGMNVPPAVVDEDSEVGQRYIAAMQLAGRYAYAGREWVVERVRQIIGGAVTDSVHNHHNYAWRETHDGRDLW
VVRKGATPAFPGQRGFVGGSMGDDAVIIEGVESEEAKASLYSTVHGAGRLFGRREAKRRFTRAEMDAWLQSRGVTLVGAD
LDESPMAYRRLPEVLAEHAGSVKVMHTLRPFAVAMAGEGEFDPFKD
>Mature_446_residues
MRADPYQERARQLAIEAGLDPDARIERPGQRSMPLWCTFRDAARKEQLAREAEALADTVASRPQAARYQNSPLKVFGSHE
DATIAQMRNCMSVGNAVAGVICADGHLGYAQPVGGVIAYEKQISISGVGFDIGCGNMAVRLDTQFSAIEDQVGTIIKDVS
KVISFGVGRKNAERVEHELFDDADAWRASDMDAYRQKAVGQLGTVGSGNHYVDLMRDEDGSVWIGVHFGSRGLGHTSATR
YLKAAGGKDGMNVPPAVVDEDSEVGQRYIAAMQLAGRYAYAGREWVVERVRQIIGGAVTDSVHNHHNYAWRETHDGRDLW
VVRKGATPAFPGQRGFVGGSMGDDAVIIEGVESEEAKASLYSTVHGAGRLFGRREAKRRFTRAEMDAWLQSRGVTLVGAD
LDESPMAYRRLPEVLAEHAGSVKVMHTLRPFAVAMAGEGEFDPFKD

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=419, Percent_Identity=28.6396181384248, Blast_Score=112, Evalue=6e-25,
Organism=Escherichia coli, GI2367224, Length=370, Percent_Identity=28.9189189189189, Blast_Score=142, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI17506665, Length=440, Percent_Identity=29.7727272727273, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24585217, Length=419, Percent_Identity=28.6396181384248, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 48626; Mature: 48626

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS00196 COPPER_BLUE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRADPYQERARQLAIEAGLDPDARIERPGQRSMPLWCTFRDAARKEQLAREAEALADTVA
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
SRPQAARYQNSPLKVFGSHEDATIAQMRNCMSVGNAVAGVICADGHLGYAQPVGGVIAYE
CCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEEEE
KQISISGVGFDIGCGNMAVRLDTQFSAIEDQVGTIIKDVSKVISFGVGRKNAERVEHELF
CEEEEECCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DDADAWRASDMDAYRQKAVGQLGTVGSGNHYVDLMRDEDGSVWIGVHFGSRGLGHTSATR
CCCHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHH
YLKAAGGKDGMNVPPAVVDEDSEVGQRYIAAMQLAGRYAYAGREWVVERVRQIIGGAVTD
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHH
SVHNHHNYAWRETHDGRDLWVVRKGATPAFPGQRGFVGGSMGDDAVIIEGVESEEAKASL
HHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHH
YSTVHGAGRLFGRREAKRRFTRAEMDAWLQSRGVTLVGADLDESPMAYRRLPEVLAEHAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCC
SVKVMHTLRPFAVAMAGEGEFDPFKD
CEEEEEHHCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MRADPYQERARQLAIEAGLDPDARIERPGQRSMPLWCTFRDAARKEQLAREAEALADTVA
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
SRPQAARYQNSPLKVFGSHEDATIAQMRNCMSVGNAVAGVICADGHLGYAQPVGGVIAYE
CCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEEEE
KQISISGVGFDIGCGNMAVRLDTQFSAIEDQVGTIIKDVSKVISFGVGRKNAERVEHELF
CEEEEECCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DDADAWRASDMDAYRQKAVGQLGTVGSGNHYVDLMRDEDGSVWIGVHFGSRGLGHTSATR
CCCHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHH
YLKAAGGKDGMNVPPAVVDEDSEVGQRYIAAMQLAGRYAYAGREWVVERVRQIIGGAVTD
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHH
SVHNHHNYAWRETHDGRDLWVVRKGATPAFPGQRGFVGGSMGDDAVIIEGVESEEAKASL
HHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHH
YSTVHGAGRLFGRREAKRRFTRAEMDAWLQSRGVTLVGADLDESPMAYRRLPEVLAEHAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCC
SVKVMHTLRPFAVAMAGEGEFDPFKD
CEEEEEHHCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA