| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ygfJ [C]
Identifier: 146339861
GI number: 146339861
Start: 3062971
End: 3064578
Strand: Direct
Name: ygfJ [C]
Synonym: BRADO2863
Alternate gene names: 146339861
Gene position: 3062971-3064578 (Clockwise)
Preceding gene: 146339860
Following gene: 146339862
Centisome position: 41.08
GC content: 68.41
Gene sequence:
>1608_bases ATGAAGTTCGGTCCTGCCAGCCCGGCTGAGGCGATCGGGGGCGTGACGGTCCACACCCTGCGCAAAGGATCATTGGTGCT CAAGAAGGGCACCTTGATCGGTCCCGCTGAGGTCGACGCGCTGGTCAGGGAAGGCGTGAAGGAGATTGTCGTCGTCAGGC TTGAGCCCGGCGACGTGTCTGAGGACGAGGCGGCTGCCGACGTCGCCAAGGTCGTGGCAGGCAAGGGCATTTACGTCGAC CGTGCCTTCACCGGCCGCGCCAATCTGTTCGCGGCCCGGCCCGGTGTGCTGGTGATCGACCGTGCGGCAGTGGATCGCAT CAACGAGGTGGATGAGGCCATCACCTTCGCGACCCTGCCGGCGTTCAAGCCGGTGGTGGAAGGCGAAATGGTCGGCACCG TCAAGCTGATCCCGTTCGGCGTCCAGGGCCACCTGCGCGATGCCGCCGTCGCGGCTGCAGGCGGCGGCGCGTTGAGCATC GCGCCCTACATCATCAAGCGCGTCGGCGTTGTCTCGACGATACTCCCTGGCCTTGCGCCCAAGGTCATCGATAAGACGCT GCGCGTCACCGCCGAGCGCCTGGCGCCAGCGGGCGCTACGATCGTCGCCGAGCGCCGCGTGCCGCATGAGCAAGCCGCGC TGGCTGCCGCGATCAAGGAGCTGCTTGGCCTCGGCGCCGAGCTTGTCATCGTGTTCGGAGCTTCCGCCATCGCCGATCGC CGCGACGTGATCCCGGCGGCGATCACCGGCATCGGCGGCGCCATCACCCATTTCGGCATGCCCGTCGATCCCGGCAACCT GCTCCTGATCGGCAGCGCCGGAGGCGTTCCGGTGCTCGGCGCGCCCGGCTGCGCCCGCTCGCCGGCCGAGAACGGTTTTG ACTGGGTGCTGATGCGGCTGCTCGCCGGCATCAAGGTCAGCCGCGCCGAGCTGACCGCGATGGGCGTCGGAGGCCTGCTG ATGGAGATCGTGACGCGGCCGCAGCCGCGCGCCAAGCCGGAGGAGAGCGGAGGCGAGCGCAAGGTTGCGGCGATCGTTCT CGCCGCGGGCCGCTCGACTCGGATGGGCGGTCCTAACAAGCTGCTCGCCGAGCTCGATGGCAAGAAGCTGGTGCGGACGG TCACCGAGCAGGCGCTGGCCTCGAAGGCGAGCGAAGTCATCGTCGTCACCGGCCATCAGGCCGAGCTGGTCGAGCAGGCG CTGTCCGACCTTCACGTCCGCTTCGTCCGCAATCCCGATTTCGCGGGCGGGCTCGCCAGCTCAGTGAAGTCAGGCATTGC CGCGGTGCCGGATGGAGTCGACGGCGCCGTGGTTTGCCTCGGCGACATGCCGATGGTGTCATCCGACCTGCTCGATCGTC TGATCGGCGCCTTTGCGCCCGATCGCGGCAATTTGATCGTCGTACCTGTCTCGGAGGGACGCCGTGGCAATCCCGTGCTG TGGTCGCGCCGGTTCTTCGCCGAGCTGATGACGCTCGACGGCGACGTCGGGGCGCGGCACCTGATCGCCAAGCACAGCGA GGCCGTCGCCGAGGTGCCGGTCGATGGCGACAGCGCTTTCCTGGATATCGATACGCCCCAGGCGCTCGAGGCGGCGCGGC GCGGGTAA
Upstream 100 bases:
>100_bases TCGCCATCGGCGCGGTCTCCCCGTCCGAGATCGCGGTCTCGATCATGGCCGAGATCACCGCGACGCTACGTTTGCCGGCC AAGGAAAAAGAGCAGGCGGC
Downstream 100 bases:
>100_bases AGCCCTGTAGCCCGCATGAGCGCAAGCGAGATGCGGGTTCTCACGTGCTGTGTCGGTGACCCGCATGTCCCTTGCGCTCA TGCGGGCTACGGTCTCCATC
Product: hypothetical protein
Products: NA
Alternate protein names: Molybdopterin Biosynthesis Protein; MobA-Like Protein-Like Protein; Molybdenum Cofactor Cytidylyltransferase; Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A; Metal Dependent Phosphohydrolase; Molybdopterin Biosynthesis; Molybdenum Hydroxylase Accessory Protein YgfJ Family; Formylmethanofuran Dehydrogenase Subunit E Region; Molybdenum Cofactor Biosynthesis Protein; Purine Catabolism Protein PucB; 4-Diphosphocytidyl-2C-Methyl-D-Erythritolsynthas E; MobA-Related Protein; UDP-N-Acetylglucosamine Pyrophosphorylase; Molybdenum Cofactor Synthesis Domain Protein; Protein Family UPF; 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase; MobA-Like Protein; Molybdenum Hydroxylase Accessory Protein; Nucleotidyl Transferase; L-Seryl-TRNA(Ser) Selenium Transferase Protein; MobA-Like Protein-Like; Molybdopterin Molybdochelatase; Phosphoglycerate/Bisphosphoglycerate Mutase; Molybdopterin Biosynthesis Protein MoeA; Nucleotide-Diphospho-Sugar Transferase; Transcriptional Regulator Fis Family; Molybdenum Cofactor Biosynthesis Family Protein
Number of amino acids: Translated: 535; Mature: 535
Protein sequence:
>535_residues MKFGPASPAEAIGGVTVHTLRKGSLVLKKGTLIGPAEVDALVREGVKEIVVVRLEPGDVSEDEAAADVAKVVAGKGIYVD RAFTGRANLFAARPGVLVIDRAAVDRINEVDEAITFATLPAFKPVVEGEMVGTVKLIPFGVQGHLRDAAVAAAGGGALSI APYIIKRVGVVSTILPGLAPKVIDKTLRVTAERLAPAGATIVAERRVPHEQAALAAAIKELLGLGAELVIVFGASAIADR RDVIPAAITGIGGAITHFGMPVDPGNLLLIGSAGGVPVLGAPGCARSPAENGFDWVLMRLLAGIKVSRAELTAMGVGGLL MEIVTRPQPRAKPEESGGERKVAAIVLAAGRSTRMGGPNKLLAELDGKKLVRTVTEQALASKASEVIVVTGHQAELVEQA LSDLHVRFVRNPDFAGGLASSVKSGIAAVPDGVDGAVVCLGDMPMVSSDLLDRLIGAFAPDRGNLIVVPVSEGRRGNPVL WSRRFFAELMTLDGDVGARHLIAKHSEAVAEVPVDGDSAFLDIDTPQALEAARRG
Sequences:
>Translated_535_residues MKFGPASPAEAIGGVTVHTLRKGSLVLKKGTLIGPAEVDALVREGVKEIVVVRLEPGDVSEDEAAADVAKVVAGKGIYVD RAFTGRANLFAARPGVLVIDRAAVDRINEVDEAITFATLPAFKPVVEGEMVGTVKLIPFGVQGHLRDAAVAAAGGGALSI APYIIKRVGVVSTILPGLAPKVIDKTLRVTAERLAPAGATIVAERRVPHEQAALAAAIKELLGLGAELVIVFGASAIADR RDVIPAAITGIGGAITHFGMPVDPGNLLLIGSAGGVPVLGAPGCARSPAENGFDWVLMRLLAGIKVSRAELTAMGVGGLL MEIVTRPQPRAKPEESGGERKVAAIVLAAGRSTRMGGPNKLLAELDGKKLVRTVTEQALASKASEVIVVTGHQAELVEQA LSDLHVRFVRNPDFAGGLASSVKSGIAAVPDGVDGAVVCLGDMPMVSSDLLDRLIGAFAPDRGNLIVVPVSEGRRGNPVL WSRRFFAELMTLDGDVGARHLIAKHSEAVAEVPVDGDSAFLDIDTPQALEAARRG >Mature_535_residues MKFGPASPAEAIGGVTVHTLRKGSLVLKKGTLIGPAEVDALVREGVKEIVVVRLEPGDVSEDEAAADVAKVVAGKGIYVD RAFTGRANLFAARPGVLVIDRAAVDRINEVDEAITFATLPAFKPVVEGEMVGTVKLIPFGVQGHLRDAAVAAAGGGALSI APYIIKRVGVVSTILPGLAPKVIDKTLRVTAERLAPAGATIVAERRVPHEQAALAAAIKELLGLGAELVIVFGASAIADR RDVIPAAITGIGGAITHFGMPVDPGNLLLIGSAGGVPVLGAPGCARSPAENGFDWVLMRLLAGIKVSRAELTAMGVGGLL MEIVTRPQPRAKPEESGGERKVAAIVLAAGRSTRMGGPNKLLAELDGKKLVRTVTEQALASKASEVIVVTGHQAELVEQA LSDLHVRFVRNPDFAGGLASSVKSGIAAVPDGVDGAVVCLGDMPMVSSDLLDRLIGAFAPDRGNLIVVPVSEGRRGNPVL WSRRFFAELMTLDGDVGARHLIAKHSEAVAEVPVDGDSAFLDIDTPQALEAARRG
Specific function: Unknown
COG id: COG0303
COG function: function code H; Molybdopterin biosynthesis enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789242, Length=195, Percent_Identity=27.6923076923077, Blast_Score=70, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55259; Mature: 55259
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFGPASPAEAIGGVTVHTLRKGSLVLKKGTLIGPAEVDALVREGVKEIVVVRLEPGDVS CCCCCCCCHHHHCCCEEEEECCCCEEEECCCEECHHHHHHHHHCCCCEEEEEEECCCCCC EDEAAADVAKVVAGKGIYVDRAFTGRANLFAARPGVLVIDRAAVDRINEVDEAITFATLP CHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCC AFKPVVEGEMVGTVKLIPFGVQGHLRDAAVAAAGGGALSIAPYIIKRVGVVSTILPGLAP CCCHHHCCCEEEEEEEEEECCCCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCH KVIDKTLRVTAERLAPAGATIVAERRVPHEQAALAAAIKELLGLGAELVIVFGASAIADR HHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCC RDVIPAAITGIGGAITHFGMPVDPGNLLLIGSAGGVPVLGAPGCARSPAENGFDWVLMRL CCCCHHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCCCHHHHHHHH LAGIKVSRAELTAMGVGGLLMEIVTRPQPRAKPEESGGERKVAAIVLAAGRSTRMGGPNK HHCCEECHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHH LLAELDGKKLVRTVTEQALASKASEVIVVTGHQAELVEQALSDLHVRFVRNPDFAGGLAS HHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHEEEEECCCCCCCHHHH SVKSGIAAVPDGVDGAVVCLGDMPMVSSDLLDRLIGAFAPDRGNLIVVPVSEGRRGNPVL HHHCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCE WSRRFFAELMTLDGDVGARHLIAKHSEAVAEVPVDGDSAFLDIDTPQALEAARRG EHHHHHHHHHHCCCCCCHHHHHHHHCHHHEECCCCCCCEEEECCCHHHHHHHHCC >Mature Secondary Structure MKFGPASPAEAIGGVTVHTLRKGSLVLKKGTLIGPAEVDALVREGVKEIVVVRLEPGDVS CCCCCCCCHHHHCCCEEEEECCCCEEEECCCEECHHHHHHHHHCCCCEEEEEEECCCCCC EDEAAADVAKVVAGKGIYVDRAFTGRANLFAARPGVLVIDRAAVDRINEVDEAITFATLP CHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCC AFKPVVEGEMVGTVKLIPFGVQGHLRDAAVAAAGGGALSIAPYIIKRVGVVSTILPGLAP CCCHHHCCCEEEEEEEEEECCCCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCH KVIDKTLRVTAERLAPAGATIVAERRVPHEQAALAAAIKELLGLGAELVIVFGASAIADR HHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCC RDVIPAAITGIGGAITHFGMPVDPGNLLLIGSAGGVPVLGAPGCARSPAENGFDWVLMRL CCCCHHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCCCHHHHHHHH LAGIKVSRAELTAMGVGGLLMEIVTRPQPRAKPEESGGERKVAAIVLAAGRSTRMGGPNK HHCCEECHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHH LLAELDGKKLVRTVTEQALASKASEVIVVTGHQAELVEQALSDLHVRFVRNPDFAGGLAS HHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHEEEEECCCCCCCHHHH SVKSGIAAVPDGVDGAVVCLGDMPMVSSDLLDRLIGAFAPDRGNLIVVPVSEGRRGNPVL HHHCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCE WSRRFFAELMTLDGDVGARHLIAKHSEAVAEVPVDGDSAFLDIDTPQALEAARRG EHHHHHHHHHHCCCCCCHHHHHHHHCHHHEECCCCCCCEEEECCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA