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The map label for this gene is ycdT [C]

Identifier: 146339697

GI number: 146339697

Start: 2893445

End: 2894668

Strand: Reverse

Name: ycdT [C]

Synonym: BRADO2694

Alternate gene names: 146339697

Gene position: 2894668-2893445 (Counterclockwise)

Preceding gene: 146339698

Following gene: 146339691

Centisome position: 38.82

GC content: 66.83

Gene sequence:

>1224_bases
ATGCGGGGTGATGGTCTGGCTTTCAGTCTGCCACGCTGGCGCGTGACGCGCTGGCTGGCAGACCCGGGATATCCGGTGTC
ACCGGACATCCGCCTTGCATTGATCGGCGAGCTATTCGGCTGCTGGTCGGTGTTCGCCGGTGGCGCGATCAACACCGTCG
CCGTGGCGGCCGCACTGGCGCTGCGCACGCCGACCATGCTTTTCATCAGCTGGCTCGTGATGGAAGTCGCAATCTGCCTG
TCGCGGCTGATCGTGATGATCATCGCCTATCGCCGCGCGGGCGCGGGGATCTCGACACCGACCGACATCCACATCCTGCT
CGCGGTGGGCTGGAGCGCCAGCGTCGGCTTTGGCGTCGGCATCAGCCTGGGATCCGGCGACTGGATCGCGGCGTCACTGA
CCTGCATCTCCTCGGCCGCGATGGTCGGCGGCATCTGCTTCCGCAATTTCAGCGCGCCACGTCTCGTCGGCACGATGATC
CTGTGCAGCATCGGCCCGGTCATCCCCGGCGTCGCGCTGTCACGCGAGCCGCTGCTATTTGCGATGTACCTGCAGATGCC
GGTGTACTTCCTCGCGATGACCGGCGCCGCCTTCCGCCTCAACAAGATGCTCGTCGCCGTCATGCATGCCAAGCGCGAGA
GCGACGAGCAGGCCCGGCGCGATCCGCTCACGGGCTTGAAGAACCGCGCTGGCCTGATCGACGCGCTGCAGAGCCGTCTC
GATGGCAAGGTCTCCGGACAGCGCGGCTTCGCCGTGCTCTATCTCGATCTCGACGGCTTCAAGCCGGTCAACGACACCTT
CGGCCATGCCGCCGGCGACGAGCTGTTGAAAATCGTCGGCCGGACGCTCAAGGACATCGTCGGGCCGTCCGACGTCATCG
CCCGGATTGGCGGCGATGAGTTCGTTGTGCTCTCCACCTCCACCGATCCAGCGCTTGATCACGCGCTCGCGCTCAGCGAG
CGCCTCATCGAGGCGATGACCGCGCCCATCCTCTTACCGGGCGGCGCGCGCGTAGACATCGGCATGAGCATCGGCATTGC
CGCTGCGCCCGATCACGGCATCGAGCCGGAGTCGCTGCTGTTTGCGGCGGACGCCGCGCTGTATGAAGCCAAGGCGAGCG
GCAAGTCGTGCTGGAGACTGGCCTCCGCGGAGGCCAATCTCGCGGCGCTGCGCAAGGTCGCAGGCCGCCAGCTCACGACG
AGGCCGGTCGAGACGGCGGCCTGA

Upstream 100 bases:

>100_bases
TAAATTTTACCGTCCATCAAGCATGCAGCGAGACGCTGATACCTCCCTAAAGACCTGTTAAGTGCCTTCGCGCTTATTGC
AACCCCGCGGAGGTATTGAA

Downstream 100 bases:

>100_bases
TGTCGGCCTAGGCAGCCGAGGTGAGCCAACTGTCGAAATCGATCGCACCCAGCCGTGCCGTCCCGAGCGGTGTCAGCGAC
TGGTCGTCGATGGCGGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MRGDGLAFSLPRWRVTRWLADPGYPVSPDIRLALIGELFGCWSVFAGGAINTVAVAAALALRTPTMLFISWLVMEVAICL
SRLIVMIIAYRRAGAGISTPTDIHILLAVGWSASVGFGVGISLGSGDWIAASLTCISSAAMVGGICFRNFSAPRLVGTMI
LCSIGPVIPGVALSREPLLFAMYLQMPVYFLAMTGAAFRLNKMLVAVMHAKRESDEQARRDPLTGLKNRAGLIDALQSRL
DGKVSGQRGFAVLYLDLDGFKPVNDTFGHAAGDELLKIVGRTLKDIVGPSDVIARIGGDEFVVLSTSTDPALDHALALSE
RLIEAMTAPILLPGGARVDIGMSIGIAAAPDHGIEPESLLFAADAALYEAKASGKSCWRLASAEANLAALRKVAGRQLTT
RPVETAA

Sequences:

>Translated_407_residues
MRGDGLAFSLPRWRVTRWLADPGYPVSPDIRLALIGELFGCWSVFAGGAINTVAVAAALALRTPTMLFISWLVMEVAICL
SRLIVMIIAYRRAGAGISTPTDIHILLAVGWSASVGFGVGISLGSGDWIAASLTCISSAAMVGGICFRNFSAPRLVGTMI
LCSIGPVIPGVALSREPLLFAMYLQMPVYFLAMTGAAFRLNKMLVAVMHAKRESDEQARRDPLTGLKNRAGLIDALQSRL
DGKVSGQRGFAVLYLDLDGFKPVNDTFGHAAGDELLKIVGRTLKDIVGPSDVIARIGGDEFVVLSTSTDPALDHALALSE
RLIEAMTAPILLPGGARVDIGMSIGIAAAPDHGIEPESLLFAADAALYEAKASGKSCWRLASAEANLAALRKVAGRQLTT
RPVETAA
>Mature_407_residues
MRGDGLAFSLPRWRVTRWLADPGYPVSPDIRLALIGELFGCWSVFAGGAINTVAVAAALALRTPTMLFISWLVMEVAICL
SRLIVMIIAYRRAGAGISTPTDIHILLAVGWSASVGFGVGISLGSGDWIAASLTCISSAAMVGGICFRNFSAPRLVGTMI
LCSIGPVIPGVALSREPLLFAMYLQMPVYFLAMTGAAFRLNKMLVAVMHAKRESDEQARRDPLTGLKNRAGLIDALQSRL
DGKVSGQRGFAVLYLDLDGFKPVNDTFGHAAGDELLKIVGRTLKDIVGPSDVIARIGGDEFVVLSTSTDPALDHALALSE
RLIEAMTAPILLPGGARVDIGMSIGIAAAPDHGIEPESLLFAADAALYEAKASGKSCWRLASAEANLAALRKVAGRQLTT
RPVETAA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=188, Percent_Identity=34.0425531914894, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=35.5029585798817, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=260, Percent_Identity=28.4615384615385, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1788381, Length=164, Percent_Identity=34.7560975609756, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI87081977, Length=160, Percent_Identity=32.5, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=35.4037267080745, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788956, Length=159, Percent_Identity=33.9622641509434, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87081881, Length=184, Percent_Identity=32.0652173913043, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=29.2682926829268, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87082007, Length=190, Percent_Identity=30, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87081974, Length=158, Percent_Identity=33.5443037974684, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788085, Length=189, Percent_Identity=26.4550264550265, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=27.2151898734177, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 42987; Mature: 42987

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGDGLAFSLPRWRVTRWLADPGYPVSPDIRLALIGELFGCWSVFAGGAINTVAVAAALA
CCCCCCEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LRTPTMLFISWLVMEVAICLSRLIVMIIAYRRAGAGISTPTDIHILLAVGWSASVGFGVG
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCEE
ISLGSGDWIAASLTCISSAAMVGGICFRNFSAPRLVGTMILCSIGPVIPGVALSREPLLF
EEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
AMYLQMPVYFLAMTGAAFRLNKMLVAVMHAKRESDEQARRDPLTGLKNRAGLIDALQSRL
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHC
DGKVSGQRGFAVLYLDLDGFKPVNDTFGHAAGDELLKIVGRTLKDIVGPSDVIARIGGDE
CCCCCCCCCEEEEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCE
FVVLSTSTDPALDHALALSERLIEAMTAPILLPGGARVDIGMSIGIAAAPDHGIEPESLL
EEEEECCCCHHHHHHHHHHHHHHHHHHCCEECCCCCEEEECEEECEEECCCCCCCHHHHE
FAADAALYEAKASGKSCWRLASAEANLAALRKVAGRQLTTRPVETAA
EEHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRGDGLAFSLPRWRVTRWLADPGYPVSPDIRLALIGELFGCWSVFAGGAINTVAVAAALA
CCCCCCEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LRTPTMLFISWLVMEVAICLSRLIVMIIAYRRAGAGISTPTDIHILLAVGWSASVGFGVG
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCEE
ISLGSGDWIAASLTCISSAAMVGGICFRNFSAPRLVGTMILCSIGPVIPGVALSREPLLF
EEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
AMYLQMPVYFLAMTGAAFRLNKMLVAVMHAKRESDEQARRDPLTGLKNRAGLIDALQSRL
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHC
DGKVSGQRGFAVLYLDLDGFKPVNDTFGHAAGDELLKIVGRTLKDIVGPSDVIARIGGDE
CCCCCCCCCEEEEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCE
FVVLSTSTDPALDHALALSERLIEAMTAPILLPGGARVDIGMSIGIAAAPDHGIEPESLL
EEEEECCCCHHHHHHHHHHHHHHHHHHCCEECCCCCEEEECEEECEEECCCCCCCHHHHE
FAADAALYEAKASGKSCWRLASAEANLAALRKVAGRQLTTRPVETAA
EEHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]