| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yfeW [C]
Identifier: 146339480
GI number: 146339480
Start: 2630345
End: 2631682
Strand: Reverse
Name: yfeW [C]
Synonym: BRADO2469
Alternate gene names: 146339480
Gene position: 2631682-2630345 (Counterclockwise)
Preceding gene: 146339491
Following gene: 146339479
Centisome position: 35.29
GC content: 65.62
Gene sequence:
>1338_bases ATGGCCGTGCGCATGATCCAGGCGCGCGCCCTCGAAAAACCAGACCACAGCGGAGACGTCCGGATGCTCGCCCCGACCCC TGCCTCGCCCGACACCGTCGGCATGTCGAAAGCCGCGCTCGATCGGATCGATGCGCATTTGCAGCAACGCTACGTCGATG CCGGCCGTTTTCCCGGCACCCAGCTGATGGTCTATCGCCGCGGCAAGATCGTGCATCAGAGCTCGCTCGGCTATGCCGAT GTCGAGCGCAAGGTCCCGGTCACCGACCAGACGATCTACCGCATCTACTCGATGACCAAGCCGATCACCTCTGTCGCGTT CATGATGCTGGTGGAGGAAGGCAAGGTTGCGCTCGACGAGCCGGTCGCAAAGTACATCCCGGAGTGGAAGAACCTCGGCG TGTTCGTCGCGGGCACCGCGCCGGCCTTCATCAGCCGGCCGCCGGCGCGGCCGATGCTGATCGTCGACCTGCTGCGCCAC ACCTCGGGTCTGACCTACGGCTTTCAGCAGCGCTCGAACGTCGATGCCGCCTATCGCGACGCCAAGATCGGCGCGGTCGA GAAGGCCGGCACGCTGCAGTCGATGATCGACGACCTCGCGAAGATTCCGCTGGAGTTCTCGCCGGGCGAGGCCTGGAACT ACTCGGTCTCGACCGACGTGGTCGGCTATCTCGTCGGCAAGATCGCCGACAAGCCGTTCGAGCAGTTTCTGAAAGAACGC ATCTTTGATCCGCTGGGCATGGCCGACACGGACTTCCACGTCCCCGCATCCAAGGCGCACCGGCTGGCGGCGTGCTATTC GGCCGATCCGGCCGGCATGATGTCGTTCCACGCGGCGGATCGCAAGGGCGGCCTGACGCTGCAGGATGATCCGGCCACCA GCACCTTCCTCAGTCCGCCCGACTTCATCTCCGGCGGCGGCGGCCTGTGCGCGACCACGGCGGACTATCTCACCTTATGC CGCGCGCTGATCAATGGCGGCGAGCTCGGCGGCGTCCGGCTGCTCGGGCCGAAGACCCTGAAGCTGATGACCTCGAACCA TCTGCCGGGCGGCGTCGACCTGCCGGCGCTGTCGCGCTCGATGTTCGCGGAAGCGGCCTATAACGGCATCGGCTTCGGCC TGGGCTTCTCGGTGACGATGGATCCGGCCAAGACGCTGATCGCCGGCAGCCCGGGCGAATATGCCTGGGGCGGCGCGGCA TCGACGGCCTTCTGGATCGATCCCGCGGAGGAGCTGATCACGATCTTCATGACCCAGGTGCTGCCGTCCAGCGCCTACCC GATCCGGCGCGAGTTGCGCTCGATGGTGTATGCGGCGATTTCGGAGAGCAATCTTTGA
Upstream 100 bases:
>100_bases TTGAATTGTGTCATGGCCGATCCTCCCGGGCTGAAGGCTACACGACGCATTCCTGGCCTGCCATTGGAAGTGGGGCGTTT TTCGGCTATCACCCGCACAA
Downstream 100 bases:
>100_bases GGGCTCCGCAGGGAACCGGGGATCGGCGTGCAATGCGCTTGGCGCACGCCCGCCGCTCTCCTATGCTGACAGCGATGTGA ACGGGGCCGGCCGCGGGGGG
Product: putative beta-lactamase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 445; Mature: 444
Protein sequence:
>445_residues MAVRMIQARALEKPDHSGDVRMLAPTPASPDTVGMSKAALDRIDAHLQQRYVDAGRFPGTQLMVYRRGKIVHQSSLGYAD VERKVPVTDQTIYRIYSMTKPITSVAFMMLVEEGKVALDEPVAKYIPEWKNLGVFVAGTAPAFISRPPARPMLIVDLLRH TSGLTYGFQQRSNVDAAYRDAKIGAVEKAGTLQSMIDDLAKIPLEFSPGEAWNYSVSTDVVGYLVGKIADKPFEQFLKER IFDPLGMADTDFHVPASKAHRLAACYSADPAGMMSFHAADRKGGLTLQDDPATSTFLSPPDFISGGGGLCATTADYLTLC RALINGGELGGVRLLGPKTLKLMTSNHLPGGVDLPALSRSMFAEAAYNGIGFGLGFSVTMDPAKTLIAGSPGEYAWGGAA STAFWIDPAEELITIFMTQVLPSSAYPIRRELRSMVYAAISESNL
Sequences:
>Translated_445_residues MAVRMIQARALEKPDHSGDVRMLAPTPASPDTVGMSKAALDRIDAHLQQRYVDAGRFPGTQLMVYRRGKIVHQSSLGYAD VERKVPVTDQTIYRIYSMTKPITSVAFMMLVEEGKVALDEPVAKYIPEWKNLGVFVAGTAPAFISRPPARPMLIVDLLRH TSGLTYGFQQRSNVDAAYRDAKIGAVEKAGTLQSMIDDLAKIPLEFSPGEAWNYSVSTDVVGYLVGKIADKPFEQFLKER IFDPLGMADTDFHVPASKAHRLAACYSADPAGMMSFHAADRKGGLTLQDDPATSTFLSPPDFISGGGGLCATTADYLTLC RALINGGELGGVRLLGPKTLKLMTSNHLPGGVDLPALSRSMFAEAAYNGIGFGLGFSVTMDPAKTLIAGSPGEYAWGGAA STAFWIDPAEELITIFMTQVLPSSAYPIRRELRSMVYAAISESNL >Mature_444_residues AVRMIQARALEKPDHSGDVRMLAPTPASPDTVGMSKAALDRIDAHLQQRYVDAGRFPGTQLMVYRRGKIVHQSSLGYADV ERKVPVTDQTIYRIYSMTKPITSVAFMMLVEEGKVALDEPVAKYIPEWKNLGVFVAGTAPAFISRPPARPMLIVDLLRHT SGLTYGFQQRSNVDAAYRDAKIGAVEKAGTLQSMIDDLAKIPLEFSPGEAWNYSVSTDVVGYLVGKIADKPFEQFLKERI FDPLGMADTDFHVPASKAHRLAACYSADPAGMMSFHAADRKGGLTLQDDPATSTFLSPPDFISGGGGLCATTADYLTLCR ALINGGELGGVRLLGPKTLKLMTSNHLPGGVDLPALSRSMFAEAAYNGIGFGLGFSVTMDPAKTLIAGSPGEYAWGGAAS TAFWIDPAEELITIFMTQVLPSSAYPIRRELRSMVYAAISESNL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI26051231, Length=124, Percent_Identity=37.9032258064516, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI26051233, Length=111, Percent_Identity=41.4414414414414, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI87082101, Length=418, Percent_Identity=25.5980861244019, Blast_Score=110, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17550934, Length=201, Percent_Identity=26.3681592039801, Blast_Score=79, Evalue=6e-15, Organism=Caenorhabditis elegans, GI115533026, Length=277, Percent_Identity=24.5487364620939, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 48039; Mature: 47908
Theoretical pI: Translated: 6.73; Mature: 6.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVRMIQARALEKPDHSGDVRMLAPTPASPDTVGMSKAALDRIDAHLQQRYVDAGRFPGT CCEEHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC QLMVYRRGKIVHQSSLGYADVERKVPVTDQTIYRIYSMTKPITSVAFMMLVEEGKVALDE EEEEEECCCEEEECCCCCHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCC PVAKYIPEWKNLGVFVAGTAPAFISRPPARPMLIVDLLRHTSGLTYGFQQRSNVDAAYRD HHHHHCCHHHCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHCCCEECCHHCCCCCHHHHC AKIGAVEKAGTLQSMIDDLAKIPLEFSPGEAWNYSVSTDVVGYLVGKIADKPFEQFLKER CCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH IFDPLGMADTDFHVPASKAHRLAACYSADPAGMMSFHAADRKGGLTLQDDPATSTFLSPP CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHEEECCCCCCCCEECCCCCCCCCCCCC DFISGGGGLCATTADYLTLCRALINGGELGGVRLLGPKTLKLMTSNHLPGGVDLPALSRS CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCCCCHHHHHH MFAEAAYNGIGFGLGFSVTMDPAKTLIAGSPGEYAWGGAASTAFWIDPAEELITIFMTQV HHHHHHHCCCEECCCEEEEECCHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHH LPSSAYPIRRELRSMVYAAISESNL CCCCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AVRMIQARALEKPDHSGDVRMLAPTPASPDTVGMSKAALDRIDAHLQQRYVDAGRFPGT CEEHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC QLMVYRRGKIVHQSSLGYADVERKVPVTDQTIYRIYSMTKPITSVAFMMLVEEGKVALDE EEEEEECCCEEEECCCCCHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCC PVAKYIPEWKNLGVFVAGTAPAFISRPPARPMLIVDLLRHTSGLTYGFQQRSNVDAAYRD HHHHHCCHHHCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHCCCEECCHHCCCCCHHHHC AKIGAVEKAGTLQSMIDDLAKIPLEFSPGEAWNYSVSTDVVGYLVGKIADKPFEQFLKER CCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH IFDPLGMADTDFHVPASKAHRLAACYSADPAGMMSFHAADRKGGLTLQDDPATSTFLSPP CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHEEECCCCCCCCEECCCCCCCCCCCCC DFISGGGGLCATTADYLTLCRALINGGELGGVRLLGPKTLKLMTSNHLPGGVDLPALSRS CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCCCCHHHHHH MFAEAAYNGIGFGLGFSVTMDPAKTLIAGSPGEYAWGGAASTAFWIDPAEELITIFMTQV HHHHHHHCCCEECCCEEEEECCHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHH LPSSAYPIRRELRSMVYAAISESNL CCCCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]