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The map label for this gene is yqxC [H]

Identifier: 146339199

GI number: 146339199

Start: 2294373

End: 2295122

Strand: Reverse

Name: yqxC [H]

Synonym: BRADO2159

Alternate gene names: 146339199

Gene position: 2295122-2294373 (Counterclockwise)

Preceding gene: 146339200

Following gene: 146339198

Centisome position: 30.78

GC content: 66.27

Gene sequence:

>750_bases
TTGATGAGACAAATGTCCCCTCCCCGCAAACGCGCTGATATCCTCCTGGTCGAACGTGGCCTGTTCGAGAGCCGGGCGCG
GGCGCAGGCGGCGATCGAGGCGGGGCTGGTGTTCGCCAATGACAAGCAGGTGGCGAAGGCCTCCGAGACCATTCCCATCG
ATGCCGTCGTCCAGGCCGAGCCGGCGCATCCCTGGGTGTCGCGCGGCGGGGTCAAGCTGGCGGCGGCGCTGGAGCGTTAC
GGCATCGAGGTCGAGGACCATGTCTGTCTCGACGTCGGCGCCTCCACCGGCGGCTTCACCGAGGCGCTGCTGGCGAACGG
CGCGGCGCTGGTGTTCGCGGTCGATGTCGGCCGCGATCAGCTGCATCCGTCGCTGCGCGATCACCCGAAGATCGTCTCGA
TGGAGCAGACCGACATCCGCAGCTATGAGGGCAAGCGGCTGCCGCAGCGGCCTGATATCGTCGTCATCGATTGCAGCTTC
ATTTCGCTGAAGGCCGTGCTGCCGGTGGCGCTGACCTTGGCGGCGTCGCCCATGAGCCTGCTGGCGCTGATCAAGCCGCA
ATTCGAAGCCAAGGGCGCGCACGGCAAGGGCGGCATCATCAAGGATGCGGCCGTCCACCGGGCGGTGTGCGACGACATCG
CCGCATTTGCAGCCTCGCTCGGCTGTAGTGACATCGAGATCTTCCCGTCATCCATCAAGGGCGGCGACGGCAACGCCGAA
TTCTTTCTGGGAGCCCGCCGCCATGGTTGA

Upstream 100 bases:

>100_bases
GGTTATGGATCCCGGGTCGGCGCTCCAACGCGCGATGCGCGTTGGAGCTTTCGCCGGGACGACACCGGAATTAGGGCGCG
AGCTCCACAACTCATGACCA

Downstream 100 bases:

>100_bases
GCGTCTCGTCATCGACCATGTCGGCCATCGCGGCGACGGCGTATCGCTGTCCTCGGGCGAGGCACTGTACGTGCCGTATA
CGCTGGCTGGCGAGACCGTC

Product: putative rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MMRQMSPPRKRADILLVERGLFESRARAQAAIEAGLVFANDKQVAKASETIPIDAVVQAEPAHPWVSRGGVKLAAALERY
GIEVEDHVCLDVGASTGGFTEALLANGAALVFAVDVGRDQLHPSLRDHPKIVSMEQTDIRSYEGKRLPQRPDIVVIDCSF
ISLKAVLPVALTLAASPMSLLALIKPQFEAKGAHGKGGIIKDAAVHRAVCDDIAAFAASLGCSDIEIFPSSIKGGDGNAE
FFLGARRHG

Sequences:

>Translated_249_residues
MMRQMSPPRKRADILLVERGLFESRARAQAAIEAGLVFANDKQVAKASETIPIDAVVQAEPAHPWVSRGGVKLAAALERY
GIEVEDHVCLDVGASTGGFTEALLANGAALVFAVDVGRDQLHPSLRDHPKIVSMEQTDIRSYEGKRLPQRPDIVVIDCSF
ISLKAVLPVALTLAASPMSLLALIKPQFEAKGAHGKGGIIKDAAVHRAVCDDIAAFAASLGCSDIEIFPSSIKGGDGNAE
FFLGARRHG
>Mature_249_residues
MMRQMSPPRKRADILLVERGLFESRARAQAAIEAGLVFANDKQVAKASETIPIDAVVQAEPAHPWVSRGGVKLAAALERY
GIEVEDHVCLDVGASTGGFTEALLANGAALVFAVDVGRDQLHPSLRDHPKIVSMEQTDIRSYEGKRLPQRPDIVVIDCSF
ISLKAVLPVALTLAASPMSLLALIKPQFEAKGAHGKGGIIKDAAVHRAVCDDIAAFAASLGCSDIEIFPSSIKGGDGNAE
FFLGARRHG

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26470; Mature: 26470

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRQMSPPRKRADILLVERGLFESRARAQAAIEAGLVFANDKQVAKASETIPIDAVVQAE
CCCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHHCEEEECCCHHHHHCCCCCEEEEEECC
PAHPWVSRGGVKLAAALERYGIEVEDHVCLDVGASTGGFTEALLANGAALVFAVDVGRDQ
CCCCHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCEEEEEEEECCHHH
LHPSLRDHPKIVSMEQTDIRSYEGKRLPQRPDIVVIDCSFISLKAVLPVALTLAASPMSL
CCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHH
LALIKPQFEAKGAHGKGGIIKDAAVHRAVCDDIAAFAASLGCSDIEIFPSSIKGGDGNAE
HHHHCCCHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEE
FFLGARRHG
EEEEECCCC
>Mature Secondary Structure
MMRQMSPPRKRADILLVERGLFESRARAQAAIEAGLVFANDKQVAKASETIPIDAVVQAE
CCCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHHCEEEECCCHHHHHCCCCCEEEEEECC
PAHPWVSRGGVKLAAALERYGIEVEDHVCLDVGASTGGFTEALLANGAALVFAVDVGRDQ
CCCCHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCEEEEEEEECCHHH
LHPSLRDHPKIVSMEQTDIRSYEGKRLPQRPDIVVIDCSFISLKAVLPVALTLAASPMSL
CCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHH
LALIKPQFEAKGAHGKGGIIKDAAVHRAVCDDIAAFAASLGCSDIEIFPSSIKGGDGNAE
HHHHCCCHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEE
FFLGARRHG
EEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]