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The map label for this gene is yfkH [H]

Identifier: 146339131

GI number: 146339131

Start: 2219466

End: 2220527

Strand: Direct

Name: yfkH [H]

Synonym: BRADO2085

Alternate gene names: 146339131

Gene position: 2219466-2220527 (Clockwise)

Preceding gene: 146339127

Following gene: 146339132

Centisome position: 29.77

GC content: 66.01

Gene sequence:

>1062_bases
ATGCGGGGGCCGGGAACGGGCGGCATGCTCGCGCTGCTCTGGCTTGCGTTCCTGATCCAATATCTCGACCAGCGCCCCGA
GCACACCGACCCTCAGCAGCGCCACGTTTCCGACGACGGCCGCGGCCGCGGCCGTCTCGCCGACTCGCCGTCGGAGATTC
CTGCGAAGGGCTGGAAGGATGTTCTGTATCGCGTCTACGAGAACGTCGGCGATCACAGGATCGTCGCGCTCGCCGCGGGC
ATGACGTTCTACACGCTGCTGGCGATCTTCCCGGCGCTCGCCGCGATGGTCGCGATCTATGGATTGTTCTCCGATCCCGC
CAAGATCACCGGCCATCTCGAGCAATTGCAGGGCCTGATGCCCGGAGGCGCGATCGACATCGCACGCGACCAGCTCACGC
GGGTGTCGGCCAAAGGCAGCCAGGCGCTTGGCGTCACCTTTCTGGTCAGCCTCGCGATCTCACTGTGGAGCGCGAACGCG
GCGATGAAGTCGCTGTTCGATACGCTGAATGTCGTCTATCGCGAGCCCGAGCGACGCGGCTTCATCAAGCTGAACGCGAT
CTCGCTGCTGTTCACCGGCGGCGCCATCCTGTTCGCACTGCTCGCCATCGCGGCCATCGTCGTGGTGCCGGTGATCTTGC
AGTATGTCGGCCTGTCGGATGCGGCCGATCTGCTGTTGCGCATCGGCCGCTGGCCCGCGATCTTCATCTGTGTCTCGCTC
GGTCTCGCGCTGATCTACCGCTATGGCCCGGATCGCGAGGAGCCGAAATGGCGCTGGATCAGCTGGGGCAGCGCGCTGGC
GGCGGCGCTCTGGCTCGGCGGGTCGGCGCTGTTCTCCTGGTATGCGGCCAACTTCGGCAGTTTCAACGCGACCTACGGTT
CGCTCGGCGCGGCCGTCGGCTTCATGACCTGGATCTGGATCTCGGCCATCGTCATCCTTATCGGCGCCGAGCTCGATGCG
GAACTGGAGCATCAGACCTTGCGCGATACGACGATGGGCGGGGAGCGGCCGCTCGGAACCCGCGGGGCCACGATGGCCGA
CACGGTCGGACGGTCGACCTGA

Upstream 100 bases:

>100_bases
TTGCTTCATCCGAAAATGAGGGATGCTCGCGATGTTCGGTCGATCGAGGAAATCGAATGAGGAGTCTCTGGACACCACTG
GCCTGCTCGCCTCGCGCCGC

Downstream 100 bases:

>100_bases
CGCCGCCATGCTCGCGGGCGCGAGCATCTGAGGCTTCTTCATCACGGCAGCAAGTCAGTCGGGTTCCGCGGGAACCCGAC
TGGGTTGAATCGTGTTCCTT

Product: putative ribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MRGPGTGGMLALLWLAFLIQYLDQRPEHTDPQQRHVSDDGRGRGRLADSPSEIPAKGWKDVLYRVYENVGDHRIVALAAG
MTFYTLLAIFPALAAMVAIYGLFSDPAKITGHLEQLQGLMPGGAIDIARDQLTRVSAKGSQALGVTFLVSLAISLWSANA
AMKSLFDTLNVVYREPERRGFIKLNAISLLFTGGAILFALLAIAAIVVVPVILQYVGLSDAADLLLRIGRWPAIFICVSL
GLALIYRYGPDREEPKWRWISWGSALAAALWLGGSALFSWYAANFGSFNATYGSLGAAVGFMTWIWISAIVILIGAELDA
ELEHQTLRDTTMGGERPLGTRGATMADTVGRST

Sequences:

>Translated_353_residues
MRGPGTGGMLALLWLAFLIQYLDQRPEHTDPQQRHVSDDGRGRGRLADSPSEIPAKGWKDVLYRVYENVGDHRIVALAAG
MTFYTLLAIFPALAAMVAIYGLFSDPAKITGHLEQLQGLMPGGAIDIARDQLTRVSAKGSQALGVTFLVSLAISLWSANA
AMKSLFDTLNVVYREPERRGFIKLNAISLLFTGGAILFALLAIAAIVVVPVILQYVGLSDAADLLLRIGRWPAIFICVSL
GLALIYRYGPDREEPKWRWISWGSALAAALWLGGSALFSWYAANFGSFNATYGSLGAAVGFMTWIWISAIVILIGAELDA
ELEHQTLRDTTMGGERPLGTRGATMADTVGRST
>Mature_353_residues
MRGPGTGGMLALLWLAFLIQYLDQRPEHTDPQQRHVSDDGRGRGRLADSPSEIPAKGWKDVLYRVYENVGDHRIVALAAG
MTFYTLLAIFPALAAMVAIYGLFSDPAKITGHLEQLQGLMPGGAIDIARDQLTRVSAKGSQALGVTFLVSLAISLWSANA
AMKSLFDTLNVVYREPERRGFIKLNAISLLFTGGAILFALLAIAAIVVVPVILQYVGLSDAADLLLRIGRWPAIFICVSL
GLALIYRYGPDREEPKWRWISWGSALAAALWLGGSALFSWYAANFGSFNATYGSLGAAVGFMTWIWISAIVILIGAELDA
ELEHQTLRDTTMGGERPLGTRGATMADTVGRST

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 38216; Mature: 38216

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGPGTGGMLALLWLAFLIQYLDQRPEHTDPQQRHVSDDGRGRGRLADSPSEIPAKGWKD
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
VLYRVYENVGDHRIVALAAGMTFYTLLAIFPALAAMVAIYGLFSDPAKITGHLEQLQGLM
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
PGGAIDIARDQLTRVSAKGSQALGVTFLVSLAISLWSANAAMKSLFDTLNVVYREPERRG
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FIKLNAISLLFTGGAILFALLAIAAIVVVPVILQYVGLSDAADLLLRIGRWPAIFICVSL
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH
GLALIYRYGPDREEPKWRWISWGSALAAALWLGGSALFSWYAANFGSFNATYGSLGAAVG
HHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHH
FMTWIWISAIVILIGAELDAELEHQTLRDTTMGGERPLGTRGATMADTVGRST
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCC
>Mature Secondary Structure
MRGPGTGGMLALLWLAFLIQYLDQRPEHTDPQQRHVSDDGRGRGRLADSPSEIPAKGWKD
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
VLYRVYENVGDHRIVALAAGMTFYTLLAIFPALAAMVAIYGLFSDPAKITGHLEQLQGLM
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
PGGAIDIARDQLTRVSAKGSQALGVTFLVSLAISLWSANAAMKSLFDTLNVVYREPERRG
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FIKLNAISLLFTGGAILFALLAIAAIVVVPVILQYVGLSDAADLLLRIGRWPAIFICVSL
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH
GLALIYRYGPDREEPKWRWISWGSALAAALWLGGSALFSWYAANFGSFNATYGSLGAAVG
HHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHH
FMTWIWISAIVILIGAELDAELEHQTLRDTTMGGERPLGTRGATMADTVGRST
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]