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The map label for this gene is vapI [H]

Identifier: 146339050

GI number: 146339050

Start: 2128408

End: 2128728

Strand: Reverse

Name: vapI [H]

Synonym: BRADO2003

Alternate gene names: 146339050

Gene position: 2128728-2128408 (Counterclockwise)

Preceding gene: 146339056

Following gene: 146339049

Centisome position: 28.55

GC content: 61.68

Gene sequence:

>321_bases
ATGTCGAAATCGTCGACTACCACCGCTAGAAGCAATCTGCTGCACAATCCGCATCCCGGCGAGATCCTGTTGGAGGAGTT
CCTCAAGCCGATGGGACTGAGCCAGAACGCGCTGGCACGCGCCGTTCATGTGCCGCCCCGCCGGATCAACGAGATCGTGC
TCGGCAAGCGCGACATCACCGCAGATACGGATCTGCGCCTCGCCCGCTATTTTCGTGTCTCCGAGGGCTTCTTCCTGGGT
CTTCAGATGGATCATGACCTCATGCAACGGCGGCGCGAGATTGCCCCCGACCTGAAAGCGATCCGTCCGCGCGCCGCGTG
A

Upstream 100 bases:

>100_bases
CGGCTCGAGGCTTTGAAGGCCGATCGCGTCGGGCAACATTCGATCAGGATCAACGATCAACGGCGAATTTGCTTCGTCTG
GGATGATAGAGGACCGGCGC

Downstream 100 bases:

>100_bases
CGGCAGCGAGAAAGCATCATGGCAAAGCCCGGCCGCCTCACCGCAAAGCCTCTCGCGCTGATGATGGGCGACGTGCTCAC
GGCCGCCTATGCCAAGCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MSKSSTTTARSNLLHNPHPGEILLEEFLKPMGLSQNALARAVHVPPRRINEIVLGKRDITADTDLRLARYFRVSEGFFLG
LQMDHDLMQRRREIAPDLKAIRPRAA

Sequences:

>Translated_106_residues
MSKSSTTTARSNLLHNPHPGEILLEEFLKPMGLSQNALARAVHVPPRRINEIVLGKRDITADTDLRLARYFRVSEGFFLG
LQMDHDLMQRRREIAPDLKAIRPRAA
>Mature_105_residues
SKSSTTTARSNLLHNPHPGEILLEEFLKPMGLSQNALARAVHVPPRRINEIVLGKRDITADTDLRLARYFRVSEGFFLGL
QMDHDLMQRRREIAPDLKAIRPRAA

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 12056; Mature: 11925

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSSTTTARSNLLHNPHPGEILLEEFLKPMGLSQNALARAVHVPPRRINEIVLGKRDIT
CCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCC
ADTDLRLARYFRVSEGFFLGLQMDHDLMQRRREIAPDLKAIRPRAA
CCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC
>Mature Secondary Structure 
SKSSTTTARSNLLHNPHPGEILLEEFLKPMGLSQNALARAVHVPPRRINEIVLGKRDIT
CCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCC
ADTDLRLARYFRVSEGFFLGLQMDHDLMQRRREIAPDLKAIRPRAA
CCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8169216 [H]