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The map label for this gene is xylH [H]

Identifier: 146338880

GI number: 146338880

Start: 1945341

End: 1946531

Strand: Direct

Name: xylH [H]

Synonym: BRADO1819

Alternate gene names: 146338880

Gene position: 1945341-1946531 (Clockwise)

Preceding gene: 146338879

Following gene: 146338881

Centisome position: 26.09

GC content: 64.65

Gene sequence:

>1191_bases
ATGACCGACAAGACGGTTTCACTCCCGGAAGAGAAGCCCCACGCCGGCTTCCTGAAGAACAATCTGCGCAGCTACGGCAT
GCTGATGTCGCTGTTCGTCATTATGCTGTTCTTCCAGATCATGACCGACGGCACCTTGCTGCAGCCGCTCAATCTCACCA
ACTTGGTGCTGCAGAACAGCTACATCGTCATCATGGCGCTGGGCATGCTGCTGGTGATCGTCACCGGGCATATCGACCTC
TCGGTCGGCTCGGTCGCGGGCTTCGTCGGCGCGGTCGCGGCCGTGCTGATGGTGCGCTACCACGTCGACTTTCCGCTCGC
CATCATCGCCTGCCTGATCGTCGGCGGCGCGATCGGCGCGGCGCAGGGCTATTGGGTGGCCTATTTCGGCATCCCCTCCT
TCATCGTGACCCTGGCCGGCATGCTCGTGTTCAAGGGCCTGGCGCTGGCGCTGCTGCAGGGGCAGTCGGTCGGCCCGTTC
CCGGCGACGTTCCAGAAGCTCTCCTCGGGGTTCATTCCGGAGTTGTTTCCGGGCGCCGGTAATCTCAACCCGACGTCGCT
CGCGATCGGCGCGATTCTTACGCTCATCCTGGTCTATGCCAGCGTCAAGGGCCGCGCGCGCGAGGTCGAGCACGGCATCG
AGGTCGAGCCGTTCGGCGTCTTCGCCGCCAAGAATGTCGTGCTGGCCGGCGTGCTGATGTACTTCACCTATCTGATCGCC
TCGCATCGCGGCCTGCCCAACGTGCTGGTCATCATGACCGCGCTGATTGCGCTGTACGGCTTCATGACGCGCCGCACCGT
CGTCGGCCGGCAGATCTACGCGGTCGGCGGCAATGCCAAGGCAGCCAAGCTGTCGGGCATCAAGACCGAGCGGCTGGTGT
TCCTGACCTTCGTCAACATGGGCGTCCTGGCGGCGCTGGCCGGCCTGATCTTCGCGGCACGCCTCAACACCGCGACGCCG
AAGGCCGGTCTCGGCTTCGAGCTCGACGTCATCGCGGCCTGCTTCATCGGCGGCGCCTCGGCCTATGGCGGCGTCGGCCG
CGTCGGTGGCGCGGTGATCGGCGCCATGATCATGGGCGTGATGAACAACGGCATGTCGATCCTGGGCATCGGCATCGACT
ATCAGCAGGTCATCAAGGGCCTGGTGCTGCTCGGCGCCGTCTGCATCGACGTCTACAACCAGCGTCGCTGA

Upstream 100 bases:

>100_bases
GCCGGACGCGACGCAGGAAAAGATCATGCGCGCCATCATGCGCAACGAAGCCATTACGAACCAGGAGACGGCCGCCTAAG
CGGCCGGGAGGACACCAGCC

Downstream 100 bases:

>100_bases
CGCGAGCGACGCTCCTGCCTTCGGAGCCTGCCGGCCGCGGCCGGCGGGCGCAGATGGCGTCGCAACAAGGTTCCGGCGCC
CGACGACGTCAGAGCATCTT

Product: putative L-arabinose transport system permease araH

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTDKTVSLPEEKPHAGFLKNNLRSYGMLMSLFVIMLFFQIMTDGTLLQPLNLTNLVLQNSYIVIMALGMLLVIVTGHIDL
SVGSVAGFVGAVAAVLMVRYHVDFPLAIIACLIVGGAIGAAQGYWVAYFGIPSFIVTLAGMLVFKGLALALLQGQSVGPF
PATFQKLSSGFIPELFPGAGNLNPTSLAIGAILTLILVYASVKGRAREVEHGIEVEPFGVFAAKNVVLAGVLMYFTYLIA
SHRGLPNVLVIMTALIALYGFMTRRTVVGRQIYAVGGNAKAAKLSGIKTERLVFLTFVNMGVLAALAGLIFAARLNTATP
KAGLGFELDVIAACFIGGASAYGGVGRVGGAVIGAMIMGVMNNGMSILGIGIDYQQVIKGLVLLGAVCIDVYNQRR

Sequences:

>Translated_396_residues
MTDKTVSLPEEKPHAGFLKNNLRSYGMLMSLFVIMLFFQIMTDGTLLQPLNLTNLVLQNSYIVIMALGMLLVIVTGHIDL
SVGSVAGFVGAVAAVLMVRYHVDFPLAIIACLIVGGAIGAAQGYWVAYFGIPSFIVTLAGMLVFKGLALALLQGQSVGPF
PATFQKLSSGFIPELFPGAGNLNPTSLAIGAILTLILVYASVKGRAREVEHGIEVEPFGVFAAKNVVLAGVLMYFTYLIA
SHRGLPNVLVIMTALIALYGFMTRRTVVGRQIYAVGGNAKAAKLSGIKTERLVFLTFVNMGVLAALAGLIFAARLNTATP
KAGLGFELDVIAACFIGGASAYGGVGRVGGAVIGAMIMGVMNNGMSILGIGIDYQQVIKGLVLLGAVCIDVYNQRR
>Mature_395_residues
TDKTVSLPEEKPHAGFLKNNLRSYGMLMSLFVIMLFFQIMTDGTLLQPLNLTNLVLQNSYIVIMALGMLLVIVTGHIDLS
VGSVAGFVGAVAAVLMVRYHVDFPLAIIACLIVGGAIGAAQGYWVAYFGIPSFIVTLAGMLVFKGLALALLQGQSVGPFP
ATFQKLSSGFIPELFPGAGNLNPTSLAIGAILTLILVYASVKGRAREVEHGIEVEPFGVFAAKNVVLAGVLMYFTYLIAS
HRGLPNVLVIMTALIALYGFMTRRTVVGRQIYAVGGNAKAAKLSGIKTERLVFLTFVNMGVLAALAGLIFAARLNTATPK
AGLGFELDVIAACFIGGASAYGGVGRVGGAVIGAMIMGVMNNGMSILGIGIDYQQVIKGLVLLGAVCIDVYNQRR

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=395, Percent_Identity=38.7341772151899, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI1790191, Length=151, Percent_Identity=44.3708609271523, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI145693152, Length=214, Percent_Identity=34.1121495327103, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1788896, Length=153, Percent_Identity=40.5228758169935, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1790524, Length=172, Percent_Identity=41.2790697674419, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87082395, Length=312, Percent_Identity=30.1282051282051, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI145693214, Length=343, Percent_Identity=30.9037900874636, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787793, Length=136, Percent_Identity=36.0294117647059, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788471, Length=141, Percent_Identity=37.5886524822695, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 41685; Mature: 41553

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDKTVSLPEEKPHAGFLKNNLRSYGMLMSLFVIMLFFQIMTDGTLLQPLNLTNLVLQNS
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHCCC
YIVIMALGMLLVIVTGHIDLSVGSVAGFVGAVAAVLMVRYHVDFPLAIIACLIVGGAIGA
HHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
AQGYWVAYFGIPSFIVTLAGMLVFKGLALALLQGQSVGPFPATFQKLSSGFIPELFPGAG
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCC
NLNPTSLAIGAILTLILVYASVKGRAREVEHGIEVEPFGVFAAKNVVLAGVLMYFTYLIA
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SHRGLPNVLVIMTALIALYGFMTRRTVVGRQIYAVGGNAKAAKLSGIKTERLVFLTFVNM
HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHH
GVLAALAGLIFAARLNTATPKAGLGFELDVIAACFIGGASAYGGVGRVGGAVIGAMIMGV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHH
MNNGMSILGIGIDYQQVIKGLVLLGAVCIDVYNQRR
HHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]