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The map label for this gene is ddpA [H]

Identifier: 146338858

GI number: 146338858

Start: 1918506

End: 1920125

Strand: Direct

Name: ddpA [H]

Synonym: BRADO1797

Alternate gene names: 146338858

Gene position: 1918506-1920125 (Clockwise)

Preceding gene: 146338857

Following gene: 146338859

Centisome position: 25.73

GC content: 62.96

Gene sequence:

>1620_bases
ATGAGTTTCAAGATGTCCAAACGTTCGTTGTTTGCGGCGACCGCGTTGCTCGCGGTGTCGTTGGCGGCGCCAGCGGCCAA
CGCGCAGAGCCGCGCGGAGACGTTGCGCTATGTCACCGGCGCGACCGTCAACACGCTCGACCCGAACATTCCGGGCTCGA
CCCGTGAAGCCTTCGCGCTGTCGATGTCGAGCTACGACCGGCTGGTGTCGTTCGGCCGCAAGCAACTCAATGGTAAGTGG
GTGTTCGATCTCGACACGATCACCGGCGAGCTCGCCGAATCCTATTCGGTCAGCGCCGACGGATTGAAGATCACCTTCAA
GCTGCGCCCCGATGCCAAGTTCCAGGACGGATCGCCGGTGACCGCCGAGGACGTGAAGTGGTCGCTCGACCGCTGCGTCA
CCGCGCCGATCCTCGGCAAGGCGCAGCTCTTGACGGGCTCGCTGACCTCGGCCGATCAGTTCAAGGTCATTGATCCCCTG
ACGATCGAAGTGACGTTGCCGAAGCCGGACAAGCTGGCGCTGCCGAACCTCGCCACCGTCTATCCGATCATTATCAACTC
CAAGCTCGCCAAGGCGCATGCGACCGCTGACGATCCGTGGGCGCTGAACTGGACCAAGGAGAACGCGGCCGGCAGCGGCG
CCTACATCGTCGAGACGTTCAAGCCGGGCGAGCAGGTGATCGCGAAGCGCAACGAGGCCTGGAACCGCGGCACGCCGGAC
AAGCCGGCAGCGTTCAAGCGGCTGATCATCCAGTCGGTGCCGGAGCCGGCGACGCGCGCCAATCTGGTCGAGCGCGGCGA
CGCCGATCTCGTGATCGATCTCCAGGCCAGCGACGTGCAGTCGCTCGAAGGCAAGGGCAAGCTGAAGGTGATCTCGACGC
CGCAATACAATGCGGTGACCTTCATCTCGATGAACAATACCATCCCGCCGTTCGACAACGTCAATGTGCGCCGCGCCATC
GCCTACGCGCTGCCCTATGACGACATGTTCAAGGCCGCTTTGTTCGGCCGCGGCGCGCCGCTGTTCGGCGCGACCTGGGC
CGACGGCAAGCCGACGAGCGGCGGCTATCCGATTCCGCAGCCGATCAAGCTCGATCTGGAGAAGGCCAAGGCCTATCTGA
AGGACGCCGGCATGCCGGAGGGCTTCTCGACGACGTTCAGCTTCAATGTCGGCCAGGCCGCGACCGCCGAGCCGATGGCG
GCGCTGGTCAAGGAATCCCTGGCTAAGATCGGCATCAAGGTCGATATCCAGAAGCTGCCGGATGCGCAGATGTCGACGGC
GATCAACGAGAAGAAGCTGCCGTTCTTCATCGAGGGTATCGTCGCCTGGCTGCCGTCGACCGACTACTTCTATCGCAACT
TCTACACCGGAAAGCAGCGCTGGAACTACTCCTCGACCGACAATGCCGAGCTGGAGAAGATCGCGCAGGAGGCTCGCTTC
GAGGCCGACAAGGCGAAGTACGAGGAAGAGGGCAAGGCGCTCAACGCCATCCACTTCGACCAGATGTTCCAGATCCCGAT
CTGGCAGGCGGCGCAGGATGCGGTGATGCAGCCGACGGTGGATGGCTACGTCTACCAGTTCACCCGCCAGGTCGATTATC
GTAACCTGAGCCGCAAGTAG

Upstream 100 bases:

>100_bases
TGGCACGTGATTTGCTGCTGGGCGTGCGTCAGACGAGCCGGCAGCCAACGGCCGATGTTTGTGAGTCCCGGATTTTGAGA
CTAGCGAGGGAACAGGGGCG

Downstream 100 bases:

>100_bases
GGCCGTCGCCGGTGGAGTGCAGCCGCGTAGCGGTGGCGCTGCACCTTGCTGCTGTTCGGAGAGGAATTCTCTTCTGAAGT
TGGACTGAAGCTCGTGCCGC

Product: putative ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 538

Protein sequence:

>539_residues
MSFKMSKRSLFAATALLAVSLAAPAANAQSRAETLRYVTGATVNTLDPNIPGSTREAFALSMSSYDRLVSFGRKQLNGKW
VFDLDTITGELAESYSVSADGLKITFKLRPDAKFQDGSPVTAEDVKWSLDRCVTAPILGKAQLLTGSLTSADQFKVIDPL
TIEVTLPKPDKLALPNLATVYPIIINSKLAKAHATADDPWALNWTKENAAGSGAYIVETFKPGEQVIAKRNEAWNRGTPD
KPAAFKRLIIQSVPEPATRANLVERGDADLVIDLQASDVQSLEGKGKLKVISTPQYNAVTFISMNNTIPPFDNVNVRRAI
AYALPYDDMFKAALFGRGAPLFGATWADGKPTSGGYPIPQPIKLDLEKAKAYLKDAGMPEGFSTTFSFNVGQAATAEPMA
ALVKESLAKIGIKVDIQKLPDAQMSTAINEKKLPFFIEGIVAWLPSTDYFYRNFYTGKQRWNYSSTDNAELEKIAQEARF
EADKAKYEEEGKALNAIHFDQMFQIPIWQAAQDAVMQPTVDGYVYQFTRQVDYRNLSRK

Sequences:

>Translated_539_residues
MSFKMSKRSLFAATALLAVSLAAPAANAQSRAETLRYVTGATVNTLDPNIPGSTREAFALSMSSYDRLVSFGRKQLNGKW
VFDLDTITGELAESYSVSADGLKITFKLRPDAKFQDGSPVTAEDVKWSLDRCVTAPILGKAQLLTGSLTSADQFKVIDPL
TIEVTLPKPDKLALPNLATVYPIIINSKLAKAHATADDPWALNWTKENAAGSGAYIVETFKPGEQVIAKRNEAWNRGTPD
KPAAFKRLIIQSVPEPATRANLVERGDADLVIDLQASDVQSLEGKGKLKVISTPQYNAVTFISMNNTIPPFDNVNVRRAI
AYALPYDDMFKAALFGRGAPLFGATWADGKPTSGGYPIPQPIKLDLEKAKAYLKDAGMPEGFSTTFSFNVGQAATAEPMA
ALVKESLAKIGIKVDIQKLPDAQMSTAINEKKLPFFIEGIVAWLPSTDYFYRNFYTGKQRWNYSSTDNAELEKIAQEARF
EADKAKYEEEGKALNAIHFDQMFQIPIWQAAQDAVMQPTVDGYVYQFTRQVDYRNLSRK
>Mature_538_residues
SFKMSKRSLFAATALLAVSLAAPAANAQSRAETLRYVTGATVNTLDPNIPGSTREAFALSMSSYDRLVSFGRKQLNGKWV
FDLDTITGELAESYSVSADGLKITFKLRPDAKFQDGSPVTAEDVKWSLDRCVTAPILGKAQLLTGSLTSADQFKVIDPLT
IEVTLPKPDKLALPNLATVYPIIINSKLAKAHATADDPWALNWTKENAAGSGAYIVETFKPGEQVIAKRNEAWNRGTPDK
PAAFKRLIIQSVPEPATRANLVERGDADLVIDLQASDVQSLEGKGKLKVISTPQYNAVTFISMNNTIPPFDNVNVRRAIA
YALPYDDMFKAALFGRGAPLFGATWADGKPTSGGYPIPQPIKLDLEKAKAYLKDAGMPEGFSTTFSFNVGQAATAEPMAA
LVKESLAKIGIKVDIQKLPDAQMSTAINEKKLPFFIEGIVAWLPSTDYFYRNFYTGKQRWNYSSTDNAELEKIAQEARFE
ADKAKYEEEGKALNAIHFDQMFQIPIWQAAQDAVMQPTVDGYVYQFTRQVDYRNLSRK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=538, Percent_Identity=27.8810408921933, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI1787052, Length=429, Percent_Identity=27.7389277389277, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1789966, Length=547, Percent_Identity=25.7769652650823, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787495, Length=559, Percent_Identity=24.5080500894454, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787551, Length=337, Percent_Identity=25.5192878338279, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789887, Length=438, Percent_Identity=25.5707762557078, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789397, Length=546, Percent_Identity=22.3443223443223, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 59246; Mature: 59115

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFKMSKRSLFAATALLAVSLAAPAANAQSRAETLRYVTGATVNTLDPNIPGSTREAFAL
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCHHEEE
SMSSYDRLVSFGRKQLNGKWVFDLDTITGELAESYSVSADGLKITFKLRPDAKFQDGSPV
EHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCC
TAEDVKWSLDRCVTAPILGKAQLLTGSLTSADQFKVIDPLTIEVTLPKPDKLALPNLATV
CHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEECCEEEEEECCCCCCCCCCCHHHE
YPIIINSKLAKAHATADDPWALNWTKENAAGSGAYIVETFKPGEQVIAKRNEAWNRGTPD
EEEEECCHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCC
KPAAFKRLIIQSVPEPATRANLVERGDADLVIDLQASDVQSLEGKGKLKVISTPQYNAVT
CHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCEEEEECCCCCEEE
FISMNNTIPPFDNVNVRRAIAYALPYDDMFKAALFGRGAPLFGATWADGKPTSGGYPIPQ
EEEECCCCCCCCCCCHHHEEEEECCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC
PIKLDLEKAKAYLKDAGMPEGFSTTFSFNVGQAATAEPMAALVKESLAKIGIKVDIQKLP
CCEECHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEHHHCC
DAQMSTAINEKKLPFFIEGIVAWLPSTDYFYRNFYTGKQRWNYSSTDNAELEKIAQEARF
CHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHC
EADKAKYEEEGKALNAIHFDQMFQIPIWQAAQDAVMQPTVDGYVYQFTRQVDYRNLSRK
CHHHHHHHHCCCEEEEEECCCEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SFKMSKRSLFAATALLAVSLAAPAANAQSRAETLRYVTGATVNTLDPNIPGSTREAFAL
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCHHEEE
SMSSYDRLVSFGRKQLNGKWVFDLDTITGELAESYSVSADGLKITFKLRPDAKFQDGSPV
EHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCC
TAEDVKWSLDRCVTAPILGKAQLLTGSLTSADQFKVIDPLTIEVTLPKPDKLALPNLATV
CHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEECCEEEEEECCCCCCCCCCCHHHE
YPIIINSKLAKAHATADDPWALNWTKENAAGSGAYIVETFKPGEQVIAKRNEAWNRGTPD
EEEEECCHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCC
KPAAFKRLIIQSVPEPATRANLVERGDADLVIDLQASDVQSLEGKGKLKVISTPQYNAVT
CHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCEEEEECCCCCEEE
FISMNNTIPPFDNVNVRRAIAYALPYDDMFKAALFGRGAPLFGATWADGKPTSGGYPIPQ
EEEECCCCCCCCCCCHHHEEEEECCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC
PIKLDLEKAKAYLKDAGMPEGFSTTFSFNVGQAATAEPMAALVKESLAKIGIKVDIQKLP
CCEECHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEHHHCC
DAQMSTAINEKKLPFFIEGIVAWLPSTDYFYRNFYTGKQRWNYSSTDNAELEKIAQEARF
CHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHC
EADKAKYEEEGKALNAIHFDQMFQIPIWQAAQDAVMQPTVDGYVYQFTRQVDYRNLSRK
CHHHHHHHHCCCEEEEEECCCEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]