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The map label for this gene is mdcF [H]

Identifier: 146338782

GI number: 146338782

Start: 1832990

End: 1833928

Strand: Direct

Name: mdcF [H]

Synonym: BRADO1716

Alternate gene names: 146338782

Gene position: 1832990-1833928 (Clockwise)

Preceding gene: 146338781

Following gene: 146338783

Centisome position: 24.58

GC content: 66.56

Gene sequence:

>939_bases
ATGCAGGCCGTTCTCAACTCCGCTCTTCCCATCTTCGCGCTGATCCTCACGGGGTTCCTGTGCGGCAGGTTCGGTGTGTT
CGATCGCACCGCGACCGACAATCTCAACCGCTTCGCGGTCTATCTGGCGCTGCCGGCACTGATCTTCACGGCGATGTCCA
AGATCGGCGTCGAGCAGGTCAGCCAGTTCGGCTTCATCGGTGCCTTCTGCGGCGGCATCGCCGCGACCTTTGCCACCGGC
TTCGTCATCAGCCGGCTGCGCGGCCGCCGCATCGCCAACGCCAGCATCGAGGGACTCGATGCGGGTTACAGCAATGTCGG
CTTCATGGGCATTCCGATGTGCCTCCTGGTGTTCGGCCCGGACAGCGCGCCGGCCTCGATCATCGCGACCTTGTTCACGG
CCTGCGTGCTGTTCCTGTTCGCGATCGTCGTGGTCGAGATGGATCTGCAGAAGGGCGCCACTCTGGGTGCGACGGTCGTG
AAGGTCGCACGCTCGCTGCTGACGAGCCCGCTGTTCATCGCGCCCGTCGCCGGCCTCGCGGTGGGCCTCAGCGGCTTCGC
GCTGCCGGCGCCGTTCATGAGCTTCACAAGCTTGCTCGGCGGCGCCGCCTCGCCGGCGGCGCTGGTCTGCATCGGCTTGT
TCCTGGCGCAGGAGCGCGTGGTGACGCACGATGCGACGTCGATTGCGATTCTCGTCTCGCTGAAGCTCGTGATGCAGCCG
GCGGTGACGGCGCTGCTGGCGTTTCACGTCTTCTCCATGCCGCCGCTGTGGTCGCATTCGGCGGTCATCCTCAGCGCGTT
GCCGATCGGCTCGGGGCCGTTCACGATCGCCAAGCTCCACGGCCTCGAAGCCGGCGTCACCTCCGGCTCGATCCTGGTCT
CGCACATCTTCGCCGTCCTCACCGTCTCGCTGCTCGTAGCCTGGCTCGCGCCGGGCTGA

Upstream 100 bases:

>100_bases
GCCGCGCAATGCCACCGGCAAGATCCTGCACCGCGAGCTGAAGAAGCGGTTTTCGTAAGGTGAGTGGTTGCGATGTGGTG
CGGTCTGATAGATAGCTGCG

Downstream 100 bases:

>100_bases
TCGCGTTCTCTTCCGGAGTGGTCCGATGAAAGTCTCGCCCGACAGTGCCGCCGACCTGATCGCTCGCCTGCTCAAGCGCC
GGGGCGTCAACCGCGTGTTC

Product: putative transporter permease malonate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MQAVLNSALPIFALILTGFLCGRFGVFDRTATDNLNRFAVYLALPALIFTAMSKIGVEQVSQFGFIGAFCGGIAATFATG
FVISRLRGRRIANASIEGLDAGYSNVGFMGIPMCLLVFGPDSAPASIIATLFTACVLFLFAIVVVEMDLQKGATLGATVV
KVARSLLTSPLFIAPVAGLAVGLSGFALPAPFMSFTSLLGGAASPAALVCIGLFLAQERVVTHDATSIAILVSLKLVMQP
AVTALLAFHVFSMPPLWSHSAVILSALPIGSGPFTIAKLHGLEAGVTSGSILVSHIFAVLTVSLLVAWLAPG

Sequences:

>Translated_312_residues
MQAVLNSALPIFALILTGFLCGRFGVFDRTATDNLNRFAVYLALPALIFTAMSKIGVEQVSQFGFIGAFCGGIAATFATG
FVISRLRGRRIANASIEGLDAGYSNVGFMGIPMCLLVFGPDSAPASIIATLFTACVLFLFAIVVVEMDLQKGATLGATVV
KVARSLLTSPLFIAPVAGLAVGLSGFALPAPFMSFTSLLGGAASPAALVCIGLFLAQERVVTHDATSIAILVSLKLVMQP
AVTALLAFHVFSMPPLWSHSAVILSALPIGSGPFTIAKLHGLEAGVTSGSILVSHIFAVLTVSLLVAWLAPG
>Mature_312_residues
MQAVLNSALPIFALILTGFLCGRFGVFDRTATDNLNRFAVYLALPALIFTAMSKIGVEQVSQFGFIGAFCGGIAATFATG
FVISRLRGRRIANASIEGLDAGYSNVGFMGIPMCLLVFGPDSAPASIIATLFTACVLFLFAIVVVEMDLQKGATLGATVV
KVARSLLTSPLFIAPVAGLAVGLSGFALPAPFMSFTSLLGGAASPAALVCIGLFLAQERVVTHDATSIAILVSLKLVMQP
AVTALLAFHVFSMPPLWSHSAVILSALPIGSGPFTIAKLHGLEAGVTSGSILVSHIFAVLTVSLLVAWLAPG

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 32216; Mature: 32216

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAVLNSALPIFALILTGFLCGRFGVFDRTATDNLNRFAVYLALPALIFTAMSKIGVEQV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SQFGFIGAFCGGIAATFATGFVISRLRGRRIANASIEGLDAGYSNVGFMGIPMCLLVFGP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCHHHHHHHHEEECC
DSAPASIIATLFTACVLFLFAIVVVEMDLQKGATLGATVVKVARSLLTSPLFIAPVAGLA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
VGLSGFALPAPFMSFTSLLGGAASPAALVCIGLFLAQERVVTHDATSIAILVSLKLVMQP
HHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AVTALLAFHVFSMPPLWSHSAVILSALPIGSGPFTIAKLHGLEAGVTSGSILVSHIFAVL
HHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
TVSLLVAWLAPG
HHHHHHHHHCCC
>Mature Secondary Structure
MQAVLNSALPIFALILTGFLCGRFGVFDRTATDNLNRFAVYLALPALIFTAMSKIGVEQV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SQFGFIGAFCGGIAATFATGFVISRLRGRRIANASIEGLDAGYSNVGFMGIPMCLLVFGP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCHHHHHHHHEEECC
DSAPASIIATLFTACVLFLFAIVVVEMDLQKGATLGATVVKVARSLLTSPLFIAPVAGLA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
VGLSGFALPAPFMSFTSLLGGAASPAALVCIGLFLAQERVVTHDATSIAILVSLKLVMQP
HHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AVTALLAFHVFSMPPLWSHSAVILSALPIGSGPFTIAKLHGLEAGVTSGSILVSHIFAVL
HHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
TVSLLVAWLAPG
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]