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The map label for this gene is ddpA [H]

Identifier: 146338651

GI number: 146338651

Start: 1695715

End: 1697220

Strand: Direct

Name: ddpA [H]

Synonym: BRADO1582

Alternate gene names: 146338651

Gene position: 1695715-1697220 (Clockwise)

Preceding gene: 146338650

Following gene: 146338653

Centisome position: 22.74

GC content: 64.34

Gene sequence:

>1506_bases
ATGTTGAAAAGACTATCGATCATCGCTTTGACCGCCATCGCTTTGACCGCGCTCGCCGCGGCGGCTGCCGTGCCGGCCTC
GGCGCAGAGCAAGAAGGACAGCGTCGTCGTCGGCATGACCCTGGAGCCGCCGGGGCTCGACCCGACCAGCGCGGCGGCCG
CCGCTATCGCCGAGGTCACGCTCTACAACGTCTATGAGACGCTGACCAAGATCAACGAGGACGGCTCGGTGTCGCCGCTG
CTGGCCGCGAGCTGGCAGGCCTCGTCCGACCTGAAGAGCTACACGTTCAAGCTCATCAAGGGCGTCAAATTCCAGAACGG
CGAGGCGTTCGATTCCGCGGCCGTGAAGTTCTCGTTCGAGAAGGCCGGCGCCGCCAACAGCACCAACAAGGACAAGGCGC
TGTTCCAGGCGATGGAGGCGGTCAATGCGCCCGACGCCGAGACGATCGAGATCAAGCTGAAGTATTCCGAGCCGAACCTG
CCGTTCCTGCTCGGCCAGGCCACCGCATCGATCGTCGAGCCGAAGAGCGCGCCGACCGATGCGACGCAGCCGGTCGGCAC
CGGCCCGTACACGCTCGGCAGCTGGGCCAAGGGCTCGTCGCTGACCTTGAACAAATGGCCTGAGTATCGCAATGCCGCGG
CCGTCAAGCTGTCCAAGGTGACGATCCGCTTTATCTCCGATCCGGCGGCGCAGGTCGCGGCGCTGCTGTCGGGCGACGTC
GAAGCGTTCCCGCGCGGCACCACGGCGCGCACCATCGCGCAGTTCAAGTCCGACCCGCGCTTCACCGTGCTGATCGGCGG
CTCCAAGGCGAAGACCATCCTCACCATCAACAACAAGAAGAAGCCGCTCGACGACGTCCGCGTCCGCCGAGCCATCCTCG
CCGCGATCGACCGCAAGGCGCTGATCGAAGGCGCGGTCGACGGGCTGGGCACGCCGATCGGAAGCTTCTATGTGCCGGGC
TCGCTCGGCTATGTCGACACCACCGACATCAACCCGTATGATCCGGAGAAGGCGAAGAAGCTGCTGGCCGAAGCCGGCGT
CACCACGCCGCTGCAACTATCGCTGCGGCTGCCCCCGCCGGCCTATGCACGGCAGGGCGGCGAGGTAATCGCGGCGCAGC
TCGCCAAGGTCGGCATCACCGCCAAGATCGAAAACCTCGAATGGGCGGCATGGCTGTCGCAGGTGTTCAACGGGCCGCAC
GATTTCGACCTCACGATCGTCTCGCATGTCGAGCCGTTCGATCTCGTGAAGTTCACTGAGCCGAACTATTATTTCGGCTA
TCAGTCCGAAGCGTTCAACAAACTCTACCAGCAGATCGTCGATACGCCGAACGAGGCCGATCGCGCCAAGCTGCTCGGCG
ACGCCCAGCGCCTGCTGGCCACCGACGCCGCCGCCGGCTTTCTGTTCCAGCCGCAATGGATCACCGTGATCAACAAGAAG
CTGAAGGGCGTATGGAAGGACGTGCCGCAGTTCGAGAATGATTTCGCGAGCTGGAGCTGGGAGTGA

Upstream 100 bases:

>100_bases
AAGCGTGATGGCGCTGCCGGCGCTGGCCGCGCGGGAAGATCCGCCTCTTGTCTCCAAGTCGCTTTGACGCATAATCGGTT
CCGTCCGGGAGAGATAAACA

Downstream 100 bases:

>100_bases
GCGGCGGAGTTCTTGGTACGACCGCCGCAGCAACGCTGCCCAATACAGTGCCCTCTCCCCTTGCGGGAGAGGGCATCGAC
GGCTGATCAGCTTGTTCGGT

Product: putative oligopeptide ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MLKRLSIIALTAIALTALAAAAAVPASAQSKKDSVVVGMTLEPPGLDPTSAAAAAIAEVTLYNVYETLTKINEDGSVSPL
LAASWQASSDLKSYTFKLIKGVKFQNGEAFDSAAVKFSFEKAGAANSTNKDKALFQAMEAVNAPDAETIEIKLKYSEPNL
PFLLGQATASIVEPKSAPTDATQPVGTGPYTLGSWAKGSSLTLNKWPEYRNAAAVKLSKVTIRFISDPAAQVAALLSGDV
EAFPRGTTARTIAQFKSDPRFTVLIGGSKAKTILTINNKKKPLDDVRVRRAILAAIDRKALIEGAVDGLGTPIGSFYVPG
SLGYVDTTDINPYDPEKAKKLLAEAGVTTPLQLSLRLPPPAYARQGGEVIAAQLAKVGITAKIENLEWAAWLSQVFNGPH
DFDLTIVSHVEPFDLVKFTEPNYYFGYQSEAFNKLYQQIVDTPNEADRAKLLGDAQRLLATDAAAGFLFQPQWITVINKK
LKGVWKDVPQFENDFASWSWE

Sequences:

>Translated_501_residues
MLKRLSIIALTAIALTALAAAAAVPASAQSKKDSVVVGMTLEPPGLDPTSAAAAAIAEVTLYNVYETLTKINEDGSVSPL
LAASWQASSDLKSYTFKLIKGVKFQNGEAFDSAAVKFSFEKAGAANSTNKDKALFQAMEAVNAPDAETIEIKLKYSEPNL
PFLLGQATASIVEPKSAPTDATQPVGTGPYTLGSWAKGSSLTLNKWPEYRNAAAVKLSKVTIRFISDPAAQVAALLSGDV
EAFPRGTTARTIAQFKSDPRFTVLIGGSKAKTILTINNKKKPLDDVRVRRAILAAIDRKALIEGAVDGLGTPIGSFYVPG
SLGYVDTTDINPYDPEKAKKLLAEAGVTTPLQLSLRLPPPAYARQGGEVIAAQLAKVGITAKIENLEWAAWLSQVFNGPH
DFDLTIVSHVEPFDLVKFTEPNYYFGYQSEAFNKLYQQIVDTPNEADRAKLLGDAQRLLATDAAAGFLFQPQWITVINKK
LKGVWKDVPQFENDFASWSWE
>Mature_501_residues
MLKRLSIIALTAIALTALAAAAAVPASAQSKKDSVVVGMTLEPPGLDPTSAAAAAIAEVTLYNVYETLTKINEDGSVSPL
LAASWQASSDLKSYTFKLIKGVKFQNGEAFDSAAVKFSFEKAGAANSTNKDKALFQAMEAVNAPDAETIEIKLKYSEPNL
PFLLGQATASIVEPKSAPTDATQPVGTGPYTLGSWAKGSSLTLNKWPEYRNAAAVKLSKVTIRFISDPAAQVAALLSGDV
EAFPRGTTARTIAQFKSDPRFTVLIGGSKAKTILTINNKKKPLDDVRVRRAILAAIDRKALIEGAVDGLGTPIGSFYVPG
SLGYVDTTDINPYDPEKAKKLLAEAGVTTPLQLSLRLPPPAYARQGGEVIAAQLAKVGITAKIENLEWAAWLSQVFNGPH
DFDLTIVSHVEPFDLVKFTEPNYYFGYQSEAFNKLYQQIVDTPNEADRAKLLGDAQRLLATDAAAGFLFQPQWITVINKK
LKGVWKDVPQFENDFASWSWE

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=516, Percent_Identity=30.2325581395349, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1789966, Length=543, Percent_Identity=27.8084714548803, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787052, Length=379, Percent_Identity=29.287598944591, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1789887, Length=337, Percent_Identity=28.7833827893175, Blast_Score=111, Evalue=9e-26,
Organism=Escherichia coli, GI1787495, Length=509, Percent_Identity=25.9332023575639, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787551, Length=437, Percent_Identity=23.5697940503432, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081878, Length=477, Percent_Identity=24.3186582809224, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1789397, Length=432, Percent_Identity=23.6111111111111, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 53902; Mature: 53902

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRLSIIALTAIALTALAAAAAVPASAQSKKDSVVVGMTLEPPGLDPTSAAAAAIAEVT
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
LYNVYETLTKINEDGSVSPLLAASWQASSDLKSYTFKLIKGVKFQNGEAFDSAAVKFSFE
HHHHHHHHHHCCCCCCCCCHHEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEH
KAGAANSTNKDKALFQAMEAVNAPDAETIEIKLKYSEPNLPFLLGQATASIVEPKSAPTD
HCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEECCCHHHHCCCCCCCCC
ATQPVGTGPYTLGSWAKGSSLTLNKWPEYRNAAAVKLSKVTIRFISDPAAQVAALLSGDV
CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHEEEEEEEEEEEECCHHHHHHHHHHCCH
EAFPRGTTARTIAQFKSDPRFTVLIGGSKAKTILTINNKKKPLDDVRVRRAILAAIDRKA
HHCCCCCHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
LIEGAVDGLGTPIGSFYVPGSLGYVDTTDINPYDPEKAKKLLAEAGVTTPLQLSLRLPPP
HHHHHHHHCCCCCCCEECCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCC
AYARQGGEVIAAQLAKVGITAKIENLEWAAWLSQVFNGPHDFDLTIVSHVEPFDLVKFTE
HHHHCCCHHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEECC
PNYYFGYQSEAFNKLYQQIVDTPNEADRAKLLGDAQRLLATDAAAGFLFQPQWITVINKK
CCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHH
LKGVWKDVPQFENDFASWSWE
HHHHHHHCCHHHHCCCCCCCC
>Mature Secondary Structure
MLKRLSIIALTAIALTALAAAAAVPASAQSKKDSVVVGMTLEPPGLDPTSAAAAAIAEVT
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
LYNVYETLTKINEDGSVSPLLAASWQASSDLKSYTFKLIKGVKFQNGEAFDSAAVKFSFE
HHHHHHHHHHCCCCCCCCCHHEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEH
KAGAANSTNKDKALFQAMEAVNAPDAETIEIKLKYSEPNLPFLLGQATASIVEPKSAPTD
HCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEECCCHHHHCCCCCCCCC
ATQPVGTGPYTLGSWAKGSSLTLNKWPEYRNAAAVKLSKVTIRFISDPAAQVAALLSGDV
CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHEEEEEEEEEEEECCHHHHHHHHHHCCH
EAFPRGTTARTIAQFKSDPRFTVLIGGSKAKTILTINNKKKPLDDVRVRRAILAAIDRKA
HHCCCCCHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
LIEGAVDGLGTPIGSFYVPGSLGYVDTTDINPYDPEKAKKLLAEAGVTTPLQLSLRLPPP
HHHHHHHHCCCCCCCEECCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCC
AYARQGGEVIAAQLAKVGITAKIENLEWAAWLSQVFNGPHDFDLTIVSHVEPFDLVKFTE
HHHHCCCHHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEECC
PNYYFGYQSEAFNKLYQQIVDTPNEADRAKLLGDAQRLLATDAAAGFLFQPQWITVINKK
CCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHH
LKGVWKDVPQFENDFASWSWE
HHHHHHHCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]