BacMap

Definition	Bradyrhizobium sp. ORS278 chromosome, complete genome.
Accession	NC_009445
Length	7,456,587

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The map label for this gene is oppD [C]

Identifier: 146338649

GI number: 146338649

Start: 1693622

End: 1694632

Strand: Direct

Name: oppD [C]

Synonym: BRADO1580

Alternate gene names: 146338649

Gene position: 1693622-1694632 (Clockwise)

Preceding gene: 146338648

Following gene: 146338650

Centisome position: 22.71

GC content: 68.45

Gene sequence:

>1011_bases
ATGAGCGCAGACAAACAGGCGCTGCTCGAGGTCTCAGGCCTCGGCATCCGGCTCAATACCAGCCGCGGCCCAGCGCAGGC
CGTGCGCGATGTGTCCTTAGCGTTGACGCGCGGCGAGACGCTCGGCATCGTCGGCGAGTCCGGCTGCGGCAAGTCGATCA
CCGCGCTGGCGCTGCTCGGGCTGCCGCCCGACAGCGCCGTCGTCAGCGGCAGCATCCGACTCGATCGCCGCGAATTGGTC
GGACTCGATGATGCCGATTACTGCAAGCTGCGCGGCAACCGCATCAGCATGATCTTCCAGGAGCCGATGACGGCGCTGAA
CCCGATGCACACCATCGGCCGTCAGGTCGCCGAGCCGCTGCTGCGGCACACCGGCTGCTCCGCGGCGGAGGCCAAACGCG
AGGCCATCGCGCTGCTCGACCGGGTCGGCCTGCCTGATCCCGCCAGACGTTTTGACGCCTACCCGCATCAGTTCTCCGGC
GGCCAGCGCCAGCGCATCACCATCGCGATGGCGCTCGCCTGCAAGCCCGACGTGCTGATCGCCGACGAGCCGACCACCGC
GCTTGACGTCACCATCCAGCGCCAGATCCTCGATCTCATCGCCGACCTCGTGGCCGAGCAGGGCATGGCGATGATCCTGA
TCTCGCATGATCTCGGCGTCATCGCCGAGAACGTGCAGCGCATGATGGTGATGTATGGCGGCACGGTCGTCGAAAGCGGA
AGCACCGACGCGGTGTTCTCGCGCATGGGCCATCCCTACACGCAGGGCCTGTTCCAGGCGCGCCCGCGGCTCGGCGCGCG
CAAGGGCACGCGGCTTGCGACCATCGCCGGCACGGTGCCGGAGCTCGCCGATCTGCCTGCCGGTTGTCCATTCGCCGATC
GCTGCGGGCTGGTGATCGATGCCTGTCGGTCGGCGCTGCCGCCGCTGATCGAGATCGGCGCAGGACATGGCGTCCGCTGC
ATTCGAACCGATGACGCGCTCGCGCGCGAGCCGGTGGGAGTCACCGCGTGA

Upstream 100 bases:

>100_bases
CGGTCTATCCGGGTGCTGCGATCGCGCTCGCTGTGCTCGGCCTCAATCTGCTCGGGGACGGTCTGCGCGACCTGCTCGAT
CCGCGGCTGGCGAGGCAGCG

Downstream 100 bases:

>100_bases
GTGCCGCCATCGGGGATGCGTCGCAGGCGCCGCTGCTCGAGATCAGGGATCTCGTCCAGCGCTACACGCTGCCGCGTGAA
AGTCTGCTGCGGCCGCCGGG

Product: putative oligopeptide ABC transporter ATP binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSADKQALLEVSGLGIRLNTSRGPAQAVRDVSLALTRGETLGIVGESGCGKSITALALLGLPPDSAVVSGSIRLDRRELV
GLDDADYCKLRGNRISMIFQEPMTALNPMHTIGRQVAEPLLRHTGCSAAEAKREAIALLDRVGLPDPARRFDAYPHQFSG
GQRQRITIAMALACKPDVLIADEPTTALDVTIQRQILDLIADLVAEQGMAMILISHDLGVIAENVQRMMVMYGGTVVESG
STDAVFSRMGHPYTQGLFQARPRLGARKGTRLATIAGTVPELADLPAGCPFADRCGLVIDACRSALPPLIEIGAGHGVRC
IRTDDALAREPVGVTA

Sequences:

>Translated_336_residues
MSADKQALLEVSGLGIRLNTSRGPAQAVRDVSLALTRGETLGIVGESGCGKSITALALLGLPPDSAVVSGSIRLDRRELV
GLDDADYCKLRGNRISMIFQEPMTALNPMHTIGRQVAEPLLRHTGCSAAEAKREAIALLDRVGLPDPARRFDAYPHQFSG
GQRQRITIAMALACKPDVLIADEPTTALDVTIQRQILDLIADLVAEQGMAMILISHDLGVIAENVQRMMVMYGGTVVESG
STDAVFSRMGHPYTQGLFQARPRLGARKGTRLATIAGTVPELADLPAGCPFADRCGLVIDACRSALPPLIEIGAGHGVRC
IRTDDALAREPVGVTA
>Mature_335_residues
SADKQALLEVSGLGIRLNTSRGPAQAVRDVSLALTRGETLGIVGESGCGKSITALALLGLPPDSAVVSGSIRLDRRELVG
LDDADYCKLRGNRISMIFQEPMTALNPMHTIGRQVAEPLLRHTGCSAAEAKREAIALLDRVGLPDPARRFDAYPHQFSGG
QRQRITIAMALACKPDVLIADEPTTALDVTIQRQILDLIADLVAEQGMAMILISHDLGVIAENVQRMMVMYGGTVVESGS
TDAVFSRMGHPYTQGLFQARPRLGARKGTRLATIAGTVPELADLPAGCPFADRCGLVIDACRSALPPLIEIGAGHGVRCI
RTDDALAREPVGVTA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for energy coupling to the transport system [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536378, Length=239, Percent_Identity=30.1255230125523, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI9961250, Length=235, Percent_Identity=29.3617021276596, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI4505771, Length=235, Percent_Identity=29.3617021276596, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI9961252, Length=235, Percent_Identity=29.3617021276596, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI156105685, Length=226, Percent_Identity=30.5309734513274, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI42741659, Length=235, Percent_Identity=29.3617021276596, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI21536376, Length=247, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI9955963, Length=233, Percent_Identity=30.9012875536481, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI105990541, Length=227, Percent_Identity=25.9911894273128, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI255708477, Length=242, Percent_Identity=28.099173553719, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI171184400, Length=232, Percent_Identity=29.3103448275862, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI9665248, Length=233, Percent_Identity=27.0386266094421, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI48994883, Length=321, Percent_Identity=47.3520249221184, Blast_Score=286, Evalue=1e-78,
Organism=Escherichia coli, GI1789963, Length=315, Percent_Identity=44.1269841269841, Blast_Score=276, Evalue=1e-75,
Organism=Escherichia coli, GI145693107, Length=276, Percent_Identity=48.1884057971014, Blast_Score=243, Evalue=1e-65,
Organism=Escherichia coli, GI1787759, Length=292, Percent_Identity=43.1506849315069, Blast_Score=234, Evalue=4e-63,
Organism=Escherichia coli, GI1788506, Length=259, Percent_Identity=45.5598455598456, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI1789962, Length=301, Percent_Identity=39.8671096345515, Blast_Score=217, Evalue=7e-58,
Organism=Escherichia coli, GI1787500, Length=333, Percent_Identity=38.4384384384384, Blast_Score=211, Evalue=4e-56,
Organism=Escherichia coli, GI1787548, Length=303, Percent_Identity=37.2937293729373, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI1787758, Length=283, Percent_Identity=38.86925795053, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1789890, Length=235, Percent_Identity=40, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI48994997, Length=261, Percent_Identity=37.1647509578544, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1787547, Length=258, Percent_Identity=35.2713178294574, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1786398, Length=241, Percent_Identity=36.5145228215768, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789891, Length=237, Percent_Identity=35.0210970464135, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789032, Length=257, Percent_Identity=32.6848249027237, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1786703, Length=193, Percent_Identity=40.9326424870466, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1787029, Length=228, Percent_Identity=34.6491228070175, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1786872, Length=230, Percent_Identity=35.2173913043478, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=35.1111111111111, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=30.7359307359307, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788644, Length=250, Percent_Identity=32.8, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789672, Length=238, Percent_Identity=30.2521008403361, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789873, Length=212, Percent_Identity=34.4339622641509, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87081791, Length=248, Percent_Identity=31.8548387096774, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI87081834, Length=230, Percent_Identity=33.4782608695652, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788761, Length=232, Percent_Identity=29.7413793103448, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787370, Length=232, Percent_Identity=29.3103448275862, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1790162, Length=249, Percent_Identity=27.3092369477912, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081709, Length=229, Percent_Identity=28.82096069869, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787105, Length=270, Percent_Identity=29.6296296296296, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1786563, Length=201, Percent_Identity=33.8308457711443, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1788450, Length=247, Percent_Identity=29.5546558704453, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786345, Length=218, Percent_Identity=32.1100917431193, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI87082267, Length=228, Percent_Identity=29.8245614035088, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787712, Length=241, Percent_Identity=29.8755186721992, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787112, Length=240, Percent_Identity=30.8333333333333, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790739, Length=237, Percent_Identity=28.6919831223629, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787792, Length=218, Percent_Identity=31.651376146789, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1786253, Length=220, Percent_Identity=31.8181818181818, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790467, Length=253, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786803, Length=239, Percent_Identity=25.9414225941423, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790544, Length=261, Percent_Identity=28.3524904214559, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789991, Length=219, Percent_Identity=31.9634703196347, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790525, Length=250, Percent_Identity=29.2, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789864, Length=253, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1789586, Length=230, Percent_Identity=28.695652173913, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788053, Length=212, Percent_Identity=25.9433962264151, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786319, Length=231, Percent_Identity=25.1082251082251, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786653, Length=232, Percent_Identity=29.7413793103448, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=27.9620853080569, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=229, Percent_Identity=35.8078602620087, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI193202349, Length=239, Percent_Identity=32.6359832635983, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17558664, Length=217, Percent_Identity=32.7188940092166, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI25146777, Length=228, Percent_Identity=31.5789473684211, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71983523, Length=245, Percent_Identity=27.7551020408163, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=245, Percent_Identity=27.7551020408163, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=245, Percent_Identity=27.7551020408163, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17569145, Length=232, Percent_Identity=31.0344827586207, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17569143, Length=234, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI193208177, Length=219, Percent_Identity=30.1369863013699, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=236, Percent_Identity=23.3050847457627, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71984940, Length=222, Percent_Identity=31.0810810810811, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=234, Percent_Identity=27.3504273504274, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=271, Percent_Identity=27.6752767527675, Blast_Score=65, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=227, Percent_Identity=32.15859030837, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24641565, Length=229, Percent_Identity=34.061135371179, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI17136662, Length=233, Percent_Identity=33.9055793991416, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281363262, Length=248, Percent_Identity=31.4516129032258, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24653245, Length=248, Percent_Identity=31.4516129032258, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI85726357, Length=237, Percent_Identity=28.6919831223629, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24643674, Length=274, Percent_Identity=24.0875912408759, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28574533, Length=234, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24666092, Length=236, Percent_Identity=25.8474576271186, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24659289, Length=251, Percent_Identity=28.6852589641434, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85725262, Length=274, Percent_Identity=24.4525547445255, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 35648; Mature: 35517

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADKQALLEVSGLGIRLNTSRGPAQAVRDVSLALTRGETLGIVGESGCGKSITALALLG
CCCCHHHHHEEECCEEEEECCCCHHHHHHHHHHEEECCCEEEEEECCCCCCCEEEEEEEC
LPPDSAVVSGSIRLDRRELVGLDDADYCKLRGNRISMIFQEPMTALNPMHTIGRQVAEPL
CCCCCCEEECCEEECHHHHCCCCCCCCEEECCCEEEEEEHHHHHHHCHHHHHHHHHHHHH
LRHTGCSAAEAKREAIALLDRVGLPDPARRFDAYPHQFSGGQRQRITIAMALACKPDVLI
HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCEEE
ADEPTTALDVTIQRQILDLIADLVAEQGMAMILISHDLGVIAENVQRMMVMYGGTVVESG
ECCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEECC
STDAVFSRMGHPYTQGLFQARPRLGARKGTRLATIAGTVPELADLPAGCPFADRCGLVID
CCHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHCCHHHH
ACRSALPPLIEIGAGHGVRCIRTDDALAREPVGVTA
HHHHHCCCEEEECCCCCEEEEECCCHHHCCCCCCCC
>Mature Secondary Structure 
SADKQALLEVSGLGIRLNTSRGPAQAVRDVSLALTRGETLGIVGESGCGKSITALALLG
CCCHHHHHEEECCEEEEECCCCHHHHHHHHHHEEECCCEEEEEECCCCCCCEEEEEEEC
LPPDSAVVSGSIRLDRRELVGLDDADYCKLRGNRISMIFQEPMTALNPMHTIGRQVAEPL
CCCCCCEEECCEEECHHHHCCCCCCCCEEECCCEEEEEEHHHHHHHCHHHHHHHHHHHHH
LRHTGCSAAEAKREAIALLDRVGLPDPARRFDAYPHQFSGGQRQRITIAMALACKPDVLI
HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCEEE
ADEPTTALDVTIQRQILDLIADLVAEQGMAMILISHDLGVIAENVQRMMVMYGGTVVESG
ECCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEECC
STDAVFSRMGHPYTQGLFQARPRLGARKGTRLATIAGTVPELADLPAGCPFADRCGLVID
CCHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHCCHHHH
ACRSALPPLIEIGAGHGVRCIRTDDALAREPVGVTA
HHHHHCCCEEEECCCCCEEEEECCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA