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The map label for this gene is potC [H]

Identifier: 146338621

GI number: 146338621

Start: 1657908

End: 1658711

Strand: Direct

Name: potC [H]

Synonym: BRADO1549

Alternate gene names: 146338621

Gene position: 1657908-1658711 (Clockwise)

Preceding gene: 146338620

Following gene: 146338622

Centisome position: 22.23

GC content: 65.92

Gene sequence:

>804_bases
GTGAGCGGCATGCACCGCAACGGCCCGATCGCCTTGCTGTTCCACACGCTCGTCGTCGGCTTCGTGCTGGCGCCGCTCAT
CGTGATCTGCCTCGTCGCGTTCACGCCCGCCAATACGCTGACCTTGCCGACGACGCAATTCTCGTTGCGTTGGTTCACGG
CCGTATTTGCGCATCCGGACTTCGTCGCCTCGTTCCTCAACAGCCTGTGGGTCGCAGCGATTGCGGCGACGATTGCTGTG
GTGCTCGCGGTTGCCGCGGGCCTCGCGCTCGACCGCTACGATTTCCGCGGCAGCGCCGCGCTGAACGCACTGTTTCTGTC
GCCGCTGATGATCCCGCATCTCGTACTCGGCGTCGCGCTGCTGCGGCTGTTCGCACTGCTGGGCGCCACCGGCAGTTTGG
TCTGGCTGACGGCGGGCCACATCGTCGTCATCACCCCTTACGTGCTGCGACTCGTGCTGGCCGCGCTGTCCGGGCTCGAC
CGCAGCGCCGAGCAGGCGGCGGTGACGCTCGGCGCCTCCGCCTGGATCGTGTTCCGACGCATCACCGTGCCGATGATCCT
GCCCGGCATCACCGGAGGCTGGCTGCTCGCCTTCATCAATTCCTTCGACGAGCTCACGATGTCGATCTTCATCACCTCGC
CGGCCACCGTCACTCTGCCGGTCCGCATGTACATGTACGCGACCGAGTCGATCGATCCGATGATGGCCGCGGTGTCGGCG
CTGATGATCGCGGTGACGGCGGCGGCGATGCTGCTGCTCGACCGCATCTTCGGACTCGACAAAATCCTCGTGGGCCAGGG
CTGA

Upstream 100 bases:

>100_bases
CGCTCGGCGCCGCGATCGCGATCCTGGTGCTGGTCATCAACCTCGTCATCTTGCTGGCCTATCAGCGTGTGGTCGAAGCC
CGCGCGCGCCGGACATTGGG

Downstream 100 bases:

>100_bases
CACCATGCCGCTGCTGCATCGCCTCGTCCGTACCGACAGCCCGGTGATCTTCTTCACCCTCAACGGCGTGCCTTGCGAAG
GCCGCGACGGCGATACCGTG

Product: ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSGMHRNGPIALLFHTLVVGFVLAPLIVICLVAFTPANTLTLPTTQFSLRWFTAVFAHPDFVASFLNSLWVAAIAATIAV
VLAVAAGLALDRYDFRGSAALNALFLSPLMIPHLVLGVALLRLFALLGATGSLVWLTAGHIVVITPYVLRLVLAALSGLD
RSAEQAAVTLGASAWIVFRRITVPMILPGITGGWLLAFINSFDELTMSIFITSPATVTLPVRMYMYATESIDPMMAAVSA
LMIAVTAAAMLLLDRIFGLDKILVGQG

Sequences:

>Translated_267_residues
MSGMHRNGPIALLFHTLVVGFVLAPLIVICLVAFTPANTLTLPTTQFSLRWFTAVFAHPDFVASFLNSLWVAAIAATIAV
VLAVAAGLALDRYDFRGSAALNALFLSPLMIPHLVLGVALLRLFALLGATGSLVWLTAGHIVVITPYVLRLVLAALSGLD
RSAEQAAVTLGASAWIVFRRITVPMILPGITGGWLLAFINSFDELTMSIFITSPATVTLPVRMYMYATESIDPMMAAVSA
LMIAVTAAAMLLLDRIFGLDKILVGQG
>Mature_266_residues
SGMHRNGPIALLFHTLVVGFVLAPLIVICLVAFTPANTLTLPTTQFSLRWFTAVFAHPDFVASFLNSLWVAAIAATIAVV
LAVAAGLALDRYDFRGSAALNALFLSPLMIPHLVLGVALLRLFALLGATGSLVWLTAGHIVVITPYVLRLVLAALSGLDR
SAEQAAVTLGASAWIVFRRITVPMILPGITGGWLLAFINSFDELTMSIFITSPATVTLPVRMYMYATESIDPMMAAVSAL
MIAVTAAAMLLLDRIFGLDKILVGQG

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=215, Percent_Identity=29.3023255813954, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787081, Length=233, Percent_Identity=33.4763948497854, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787714, Length=228, Percent_Identity=31.5789473684211, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786980, Length=186, Percent_Identity=34.4086021505376, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28408; Mature: 28277

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGMHRNGPIALLFHTLVVGFVLAPLIVICLVAFTPANTLTLPTTQFSLRWFTAVFAHPD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCHH
FVASFLNSLWVAAIAATIAVVLAVAAGLALDRYDFRGSAALNALFLSPLMIPHLVLGVAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LRLFALLGATGSLVWLTAGHIVVITPYVLRLVLAALSGLDRSAEQAAVTLGASAWIVFRR
HHHHHHHCCCCCEEEEECCCEEEECHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH
ITVPMILPGITGGWLLAFINSFDELTMSIFITSPATVTLPVRMYMYATESIDPMMAAVSA
HHHHHHCCCCCHHHHHHHHHHHHHHEEEEEEECCCEEEEHHHEEEHHHCCCCHHHHHHHH
LMIAVTAAAMLLLDRIFGLDKILVGQG
HHHHHHHHHHHHHHHHHCCCHHHCCCC
>Mature Secondary Structure 
SGMHRNGPIALLFHTLVVGFVLAPLIVICLVAFTPANTLTLPTTQFSLRWFTAVFAHPD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCHH
FVASFLNSLWVAAIAATIAVVLAVAAGLALDRYDFRGSAALNALFLSPLMIPHLVLGVAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LRLFALLGATGSLVWLTAGHIVVITPYVLRLVLAALSGLDRSAEQAAVTLGASAWIVFRR
HHHHHHHCCCCCEEEEECCCEEEECHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH
ITVPMILPGITGGWLLAFINSFDELTMSIFITSPATVTLPVRMYMYATESIDPMMAAVSA
HHHHHHCCCCCHHHHHHHHHHHHHHEEEEEEECCCEEEEHHHEEEHHHCCCCHHHHHHHH
LMIAVTAAAMLLLDRIFGLDKILVGQG
HHHHHHHHHHHHHHHHHCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]