Click here to switch to the map view.

The map label for this gene is pecT [H]

Identifier: 146338605

GI number: 146338605

Start: 1637585

End: 1638445

Strand: Direct

Name: pecT [H]

Synonym: BRADO1533

Alternate gene names: 146338605

Gene position: 1637585-1638445 (Clockwise)

Preceding gene: 146338603

Following gene: 146338612

Centisome position: 21.96

GC content: 64.69

Gene sequence:

>861_bases
GTGAACTTCGATATCGACTGCCTCAGATCGTTTCTCGTCATCGCCGACACGATGAGCTTTTCGCGCGCAGCCGAGACCGT
CGGCCGGTCGCAATCGACGATCAGCCAGCAGATGACCAAGCTCGAAATGCAGGTCGGCAAGCCGCTGCTGACGCGGCGGA
AGGGCCGGGTGCTGGAGCTGACACCCGAGGGCGACCGCTTCGTGCAATACGCACGGCGCATCCTGCAGCTCAATGACGAG
GCCTATGCGTCGATGCGCGACGACGTCCTGGTTGGATTCGTCCGGCTCGGCGTTCCGCTCGATTTCTTCGGACGCGACTT
TACGACCTGGCTCGCGCGGTTCAAGAGAAAGAATCCGATGGTCGGTATCGAGGTGGAGGCCAACCAGTCAGAAAACCTGA
TGAAGCGCAGCGCCCGCGGCGAGTTCGATCTCGCGTTCTTCAAACAGGACGTCGGCGCCCGGGCCGGCACCTCGATGCTG
ACGGAGCAACTGGTTTGGGTCAGCGGCCCGAACTACAGCCCGGATGATGCATCCATCCCGCTTGTTCTGTTCCCGGAAGG
CTGCGCTTACCGGCGCTTCGCGCTGTCGTCGCTGAAGCAGCACGACCGGCGCTGGCACCTCAGCTTCGTCAGTCCGAGTT
TCGAGTGCCTGAAGGCGGCGACGCTCGAAGGGTTGGGCATCACGGTTCTGGCACGCGCACTGGTGCAGCCGCCGCTGCGC
ATCATCCGGCAGGATCTCGGTCTTCCCCGCCTGCCTCCCGTCGAGCTCGCCTACGCCCGCGGGCGGACCAACTCCCGGAC
GGTGGGGGAGTTGACGACGTTCCTCGCCGACAGGCTGGCGGGAGCGGGCCTGCCGGCGTAA

Upstream 100 bases:

>100_bases
CCAGCCGATGGCGCAAGTCTGGTCTTTACGAAGCGTGGCCCGGCCGACAAAGTGAATAATGACGATGTGAGTATCGTCTT
TTTCGATAGCGGGGATTGTC

Downstream 100 bases:

>100_bases
TGGCCGCAGGTCGCGCGGAAATCACCCCTCCGCCACCGCATCGCCCCAGGCATGCGCGATCTCCGTCGCGCCGCTGTTCG
TTACGCCGTCGCGCAGCACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MNFDIDCLRSFLVIADTMSFSRAAETVGRSQSTISQQMTKLEMQVGKPLLTRRKGRVLELTPEGDRFVQYARRILQLNDE
AYASMRDDVLVGFVRLGVPLDFFGRDFTTWLARFKRKNPMVGIEVEANQSENLMKRSARGEFDLAFFKQDVGARAGTSML
TEQLVWVSGPNYSPDDASIPLVLFPEGCAYRRFALSSLKQHDRRWHLSFVSPSFECLKAATLEGLGITVLARALVQPPLR
IIRQDLGLPRLPPVELAYARGRTNSRTVGELTTFLADRLAGAGLPA

Sequences:

>Translated_286_residues
MNFDIDCLRSFLVIADTMSFSRAAETVGRSQSTISQQMTKLEMQVGKPLLTRRKGRVLELTPEGDRFVQYARRILQLNDE
AYASMRDDVLVGFVRLGVPLDFFGRDFTTWLARFKRKNPMVGIEVEANQSENLMKRSARGEFDLAFFKQDVGARAGTSML
TEQLVWVSGPNYSPDDASIPLVLFPEGCAYRRFALSSLKQHDRRWHLSFVSPSFECLKAATLEGLGITVLARALVQPPLR
IIRQDLGLPRLPPVELAYARGRTNSRTVGELTTFLADRLAGAGLPA
>Mature_286_residues
MNFDIDCLRSFLVIADTMSFSRAAETVGRSQSTISQQMTKLEMQVGKPLLTRRKGRVLELTPEGDRFVQYARRILQLNDE
AYASMRDDVLVGFVRLGVPLDFFGRDFTTWLARFKRKNPMVGIEVEANQSENLMKRSARGEFDLAFFKQDVGARAGTSML
TEQLVWVSGPNYSPDDASIPLVLFPEGCAYRRFALSSLKQHDRRWHLSFVSPSFECLKAATLEGLGITVLARALVQPPLR
IIRQDLGLPRLPPVELAYARGRTNSRTVGELTTFLADRLAGAGLPA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=267, Percent_Identity=31.8352059925094, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1787806, Length=249, Percent_Identity=25.3012048192771, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI157672245, Length=166, Percent_Identity=30.1204819277108, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=300, Percent_Identity=26, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787879, Length=154, Percent_Identity=31.1688311688312, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32047; Mature: 32047

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFDIDCLRSFLVIADTMSFSRAAETVGRSQSTISQQMTKLEMQVGKPLLTRRKGRVLEL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCEEEE
TPEGDRFVQYARRILQLNDEAYASMRDDVLVGFVRLGVPLDFFGRDFTTWLARFKRKNPM
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCCC
VGIEVEANQSENLMKRSARGEFDLAFFKQDVGARAGTSMLTEQLVWVSGPNYSPDDASIP
EEEEEECCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCCCCCC
LVLFPEGCAYRRFALSSLKQHDRRWHLSFVSPSFECLKAATLEGLGITVLARALVQPPLR
EEECCCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
IIRQDLGLPRLPPVELAYARGRTNSRTVGELTTFLADRLAGAGLPA
HHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNFDIDCLRSFLVIADTMSFSRAAETVGRSQSTISQQMTKLEMQVGKPLLTRRKGRVLEL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCEEEE
TPEGDRFVQYARRILQLNDEAYASMRDDVLVGFVRLGVPLDFFGRDFTTWLARFKRKNPM
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCCC
VGIEVEANQSENLMKRSARGEFDLAFFKQDVGARAGTSMLTEQLVWVSGPNYSPDDASIP
EEEEEECCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCCCCCC
LVLFPEGCAYRRFALSSLKQHDRRWHLSFVSPSFECLKAATLEGLGITVLARALVQPPLR
EEECCCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
IIRQDLGLPRLPPVELAYARGRTNSRTVGELTTFLADRLAGAGLPA
HHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]