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The map label for this gene is yqfA [H]

Identifier: 146338516

GI number: 146338516

Start: 1534899

End: 1535594

Strand: Direct

Name: yqfA [H]

Synonym: BRADO1434

Alternate gene names: 146338516

Gene position: 1534899-1535594 (Clockwise)

Preceding gene: 146338513

Following gene: 146338517

Centisome position: 20.58

GC content: 62.36

Gene sequence:

>696_bases
ATGAGCGTCTTTCAACTGAAGCAGTTCGCCTCCACCTCCGTCCACGCCGCCACGGGGGCGATGCGTTGGAATTACGACAA
GGTCGAGATGATCGCCGACGGCGTCGTCCACATCGTGGGCATCGCCGCGGGGCTCGTCGCCACCACGGTCCTGGTGGTGC
TGACCTCGATCTATGCAAGCCCCATCGACATCGTCGTGGTGTCGATCTACGTCGCAGGTCTCTTGTCGATGCTGATCCTG
TCGGCGACCTACAATCTCTGGCCGGTGTCGCCGACCAAATGGGTGCTGCGCCGGTTCGATCATTCGGCGATCTATGTGCT
GATCGCGGCCACCTATACGCCGTTCATCGCCGCGCTGAAGGACACCGTGTTCTCCGTGGCGCTGCTGCTCGGCGTCTGGG
GCGTGGCGATTTTCGGCATCGTGCTGAAGCTGCGCTGGCCGGGCCGGTTCGATGCGTTGTCGATCGGGCTGTATCTGGCG
CTCGGATGGAGCGGCATCATGATGTACGACCGGGTGATCGCGGTCATGCCGACCTCGGTGCTCGCCTGCGTGCTGACCGG
CGGCATTCTCTACAGCCTCGGCGTGATCTTCCATTCGTGGCGGCGCTTGCGCTTCCAGAACGCGATCTGGCATGGTTTCG
TGTTGCTGGGCGCCAGTTTCCATTATACGGCGGTGCTCGATCTCGTCCTGACATAG

Upstream 100 bases:

>100_bases
CCGTTCCAGGTAGAACCACGGCTTGAACGGAACGTTGACCACTGGAAACCATAATCGTCCTTCCAAGATCGTCTCCGGCA
AACCAGCGCCAGGTTCCTCG

Downstream 100 bases:

>100_bases
ATCATTCCAGGACAAATTCCGTGCGGAGGGCTTTGCATGCAGGTGACCGGCAAGATTGTAGTGGTCACCGGTGGAGCCCG
TGGCATCGGCAAGGCGCTGT

Product: hemolysin III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSVFQLKQFASTSVHAATGAMRWNYDKVEMIADGVVHIVGIAAGLVATTVLVVLTSIYASPIDIVVVSIYVAGLLSMLIL
SATYNLWPVSPTKWVLRRFDHSAIYVLIAATYTPFIAALKDTVFSVALLLGVWGVAIFGIVLKLRWPGRFDALSIGLYLA
LGWSGIMMYDRVIAVMPTSVLACVLTGGILYSLGVIFHSWRRLRFQNAIWHGFVLLGASFHYTAVLDLVLT

Sequences:

>Translated_231_residues
MSVFQLKQFASTSVHAATGAMRWNYDKVEMIADGVVHIVGIAAGLVATTVLVVLTSIYASPIDIVVVSIYVAGLLSMLIL
SATYNLWPVSPTKWVLRRFDHSAIYVLIAATYTPFIAALKDTVFSVALLLGVWGVAIFGIVLKLRWPGRFDALSIGLYLA
LGWSGIMMYDRVIAVMPTSVLACVLTGGILYSLGVIFHSWRRLRFQNAIWHGFVLLGASFHYTAVLDLVLT
>Mature_230_residues
SVFQLKQFASTSVHAATGAMRWNYDKVEMIADGVVHIVGIAAGLVATTVLVVLTSIYASPIDIVVVSIYVAGLLSMLILS
ATYNLWPVSPTKWVLRRFDHSAIYVLIAATYTPFIAALKDTVFSVALLLGVWGVAIFGIVLKLRWPGRFDALSIGLYLAL
GWSGIMMYDRVIAVMPTSVLACVLTGGILYSLGVIFHSWRRLRFQNAIWHGFVLLGASFHYTAVLDLVLT

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=229, Percent_Identity=27.5109170305677, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1789266, Length=207, Percent_Identity=37.1980676328502, Blast_Score=130, Evalue=8e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 25283; Mature: 25152

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVFQLKQFASTSVHAATGAMRWNYDKVEMIADGVVHIVGIAAGLVATTVLVVLTSIYAS
CCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PIDIVVVSIYVAGLLSMLILSATYNLWPVSPTKWVLRRFDHSAIYVLIAATYTPFIAALK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
DTVFSVALLLGVWGVAIFGIVLKLRWPGRFDALSIGLYLALGWSGIMMYDRVIAVMPTSV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LACVLTGGILYSLGVIFHSWRRLRFQNAIWHGFVLLGASFHYTAVLDLVLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SVFQLKQFASTSVHAATGAMRWNYDKVEMIADGVVHIVGIAAGLVATTVLVVLTSIYAS
CHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PIDIVVVSIYVAGLLSMLILSATYNLWPVSPTKWVLRRFDHSAIYVLIAATYTPFIAALK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
DTVFSVALLLGVWGVAIFGIVLKLRWPGRFDALSIGLYLALGWSGIMMYDRVIAVMPTSV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LACVLTGGILYSLGVIFHSWRRLRFQNAIWHGFVLLGASFHYTAVLDLVLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]