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The map label for this gene is yjiR [C]

Identifier: 146338433

GI number: 146338433

Start: 1434177

End: 1435586

Strand: Direct

Name: yjiR [C]

Synonym: BRADO1348

Alternate gene names: 146338433

Gene position: 1434177-1435586 (Clockwise)

Preceding gene: 146338430

Following gene: 146338435

Centisome position: 19.23

GC content: 68.37

Gene sequence:

>1410_bases
TTGTTCGACGAGCAATCGCGCAGTAGATATCTCGGTGCAATCGAAACATTGCTCTCGGTGCAATATAGCATGAATGCCTC
GTATACGACCCTGGTGGACGACATCGCCGAGGACATCGCGCAAGGCCGGCTGAAGGCCGGCGACCGGCTGCCGCCGCAGC
GCCAGTTCGCCTATGAGCGAGGAATTGCCGCATCCACGGCAGCCCGCGTCTATGCCGAATTATTGCGCAGGGGTCTCGTC
GTGGGCGAGGTCGGCCGCGGCACCTTCGTCGCAGGCGAGCCGGTGCCCGTGCCACCGTCGTTGCGGCTCGAGGCGTTCGA
CGGCCGCATCGATCTCGAGTTCAATTTTCCGACGCTGCCCGATCAGGCGGCGTTGATCGCGAAGTCGCTGGCCGCCTGGC
AGCGGCCGGAGAAGCTGGCGCCGGTGCTGGCGCCGATCACGCAGCGCCGGCTGGTCGAGGCCGGGCGTACCGCCGCAGCT
TTTTTCGCGGGCGAACGCTGGCGCCCGCGCGCGGAGAACTTCGTGTTCGCCGGCAGCGGGCGGCAGTCGCTGGCGGCGGC
GATCTCGGCGCTGGTGCCGGTCGGCGGCCGGCTCGGCGTCGAGGCCGTGACCTATCCGATGATCAAGGGCATCGCGGCGC
GGCTCGGCGTCGCGCTCGTGCCGATCGCGATGGACGCCGAGGGCATCCGTCCGGATGCGCTGACGAAGGCGCATCGCACG
AGCGCACTCAATGCAATCTATATTCAGCCAGTAATGCAGAACCCGCTCGGGCTCACCATGAGCGACGCGCGCCGCGAGGA
GATCGTGCGGCTCGTCCGCAAGCACGACCTGATGATCATCGAGGACCTTGTCTACGGATTCCTGAGCGATCAGGTCTCGC
TCGCTTCGCAGGCGGAGGAGCGCGTCATCATCGTCGACAGCCTCGCCAAGCGTCTCGCGCCGGGCATTGCGGTCGGCTTC
CTCTACGTGCCCTCGCATCTGCGCGAGAAATTCGCCGCAACGGTGCGGACGGGCGCGTGGTCGGTGACCTCGCTTGCGCT
GGCCGCGGGCATGGGACTGCTCGCGGACGGCACCGCGGCCGAGATCACCCGGCGCAAGCGTGCGGACGCGCTGGTCCGGC
AGGCGATCGTCGCCGAGTGCCTGGCTGGGCATCGCATCGACGCCGATCCGCGCTCCTATCACGTCTGGCTGCATCTGCCC
GAAGGCTGGCGCGCCGAGGCGCTGACGGCCGCCGCCGCACGTGCAGGCATCGCGATCACGCCGGCGAGCGCGTTCGCGGT
GGCGCATGGCCACTCACCGAATGCTGTCAGGCTCGCGCTCGGCCTGCCGAGCCATGACGATCTGCGCACCGCCTTGTGGC
GCCTCGCCGGCCTCCTGTCGCATCACGACGCTTCCGACATGACGGAGTGA

Upstream 100 bases:

>100_bases
GGGACCTGGAGCAAATTGCTCTTTCCGTGAGCAACCTGCGGAGTTGCCCAACGCTGCGCCAGGGAATATGCCATGAGTCA
CCTATTGGTCTTCGATTGCG

Downstream 100 bases:

>100_bases
GCACTGCTGCTCTCACTGATCGTCATTTCGGGGCAAGGCCGCAGGCCTTGAGCCCGGAATCTCGAGATTGTTGAGCGCCC
GGAATGACGTCGGGCGGAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MFDEQSRSRYLGAIETLLSVQYSMNASYTTLVDDIAEDIAQGRLKAGDRLPPQRQFAYERGIAASTAARVYAELLRRGLV
VGEVGRGTFVAGEPVPVPPSLRLEAFDGRIDLEFNFPTLPDQAALIAKSLAAWQRPEKLAPVLAPITQRRLVEAGRTAAA
FFAGERWRPRAENFVFAGSGRQSLAAAISALVPVGGRLGVEAVTYPMIKGIAARLGVALVPIAMDAEGIRPDALTKAHRT
SALNAIYIQPVMQNPLGLTMSDARREEIVRLVRKHDLMIIEDLVYGFLSDQVSLASQAEERVIIVDSLAKRLAPGIAVGF
LYVPSHLREKFAATVRTGAWSVTSLALAAGMGLLADGTAAEITRRKRADALVRQAIVAECLAGHRIDADPRSYHVWLHLP
EGWRAEALTAAAARAGIAITPASAFAVAHGHSPNAVRLALGLPSHDDLRTALWRLAGLLSHHDASDMTE

Sequences:

>Translated_469_residues
MFDEQSRSRYLGAIETLLSVQYSMNASYTTLVDDIAEDIAQGRLKAGDRLPPQRQFAYERGIAASTAARVYAELLRRGLV
VGEVGRGTFVAGEPVPVPPSLRLEAFDGRIDLEFNFPTLPDQAALIAKSLAAWQRPEKLAPVLAPITQRRLVEAGRTAAA
FFAGERWRPRAENFVFAGSGRQSLAAAISALVPVGGRLGVEAVTYPMIKGIAARLGVALVPIAMDAEGIRPDALTKAHRT
SALNAIYIQPVMQNPLGLTMSDARREEIVRLVRKHDLMIIEDLVYGFLSDQVSLASQAEERVIIVDSLAKRLAPGIAVGF
LYVPSHLREKFAATVRTGAWSVTSLALAAGMGLLADGTAAEITRRKRADALVRQAIVAECLAGHRIDADPRSYHVWLHLP
EGWRAEALTAAAARAGIAITPASAFAVAHGHSPNAVRLALGLPSHDDLRTALWRLAGLLSHHDASDMTE
>Mature_469_residues
MFDEQSRSRYLGAIETLLSVQYSMNASYTTLVDDIAEDIAQGRLKAGDRLPPQRQFAYERGIAASTAARVYAELLRRGLV
VGEVGRGTFVAGEPVPVPPSLRLEAFDGRIDLEFNFPTLPDQAALIAKSLAAWQRPEKLAPVLAPITQRRLVEAGRTAAA
FFAGERWRPRAENFVFAGSGRQSLAAAISALVPVGGRLGVEAVTYPMIKGIAARLGVALVPIAMDAEGIRPDALTKAHRT
SALNAIYIQPVMQNPLGLTMSDARREEIVRLVRKHDLMIIEDLVYGFLSDQVSLASQAEERVIIVDSLAKRLAPGIAVGF
LYVPSHLREKFAATVRTGAWSVTSLALAAGMGLLADGTAAEITRRKRADALVRQAIVAECLAGHRIDADPRSYHVWLHLP
EGWRAEALTAAAARAGIAITPASAFAVAHGHSPNAVRLALGLPSHDDLRTALWRLAGLLSHHDASDMTE

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=474, Percent_Identity=26.5822784810127, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787710, Length=445, Percent_Identity=25.1685393258427, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50540; Mature: 50540

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDEQSRSRYLGAIETLLSVQYSMNASYTTLVDDIAEDIAQGRLKAGDRLPPQRQFAYER
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHC
GIAASTAARVYAELLRRGLVVGEVGRGTFVAGEPVPVPPSLRLEAFDGRIDLEFNFPTLP
CCHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCCEEEEECCEEEEEECCCCCC
DQAALIAKSLAAWQRPEKLAPVLAPITQRRLVEAGRTAAAFFAGERWRPRAENFVFAGSG
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCEEEECCC
RQSLAAAISALVPVGGRLGVEAVTYPMIKGIAARLGVALVPIAMDAEGIRPDALTKAHRT
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHEEEEEECCCCCCCHHHHHHHHH
SALNAIYIQPVMQNPLGLTMSDARREEIVRLVRKHDLMIIEDLVYGFLSDQVSLASQAEE
HCCCEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
RVIIVDSLAKRLAPGIAVGFLYVPSHLREKFAATVRTGAWSVTSLALAAGMGLLADGTAA
CEEEHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHH
EITRRKRADALVRQAIVAECLAGHRIDADPRSYHVWLHLPEGWRAEALTAAAARAGIAIT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEC
PASAFAVAHGHSPNAVRLALGLPSHDDLRTALWRLAGLLSHHDASDMTE
CCHHEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MFDEQSRSRYLGAIETLLSVQYSMNASYTTLVDDIAEDIAQGRLKAGDRLPPQRQFAYER
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHC
GIAASTAARVYAELLRRGLVVGEVGRGTFVAGEPVPVPPSLRLEAFDGRIDLEFNFPTLP
CCHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCCEEEEECCEEEEEECCCCCC
DQAALIAKSLAAWQRPEKLAPVLAPITQRRLVEAGRTAAAFFAGERWRPRAENFVFAGSG
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCEEEECCC
RQSLAAAISALVPVGGRLGVEAVTYPMIKGIAARLGVALVPIAMDAEGIRPDALTKAHRT
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHEEEEEECCCCCCCHHHHHHHHH
SALNAIYIQPVMQNPLGLTMSDARREEIVRLVRKHDLMIIEDLVYGFLSDQVSLASQAEE
HCCCEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
RVIIVDSLAKRLAPGIAVGFLYVPSHLREKFAATVRTGAWSVTSLALAAGMGLLADGTAA
CEEEHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHH
EITRRKRADALVRQAIVAECLAGHRIDADPRSYHVWLHLPEGWRAEALTAAAARAGIAIT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEC
PASAFAVAHGHSPNAVRLALGLPSHDDLRTALWRLAGLLSHHDASDMTE
CCHHEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]