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The map label for this gene is omp16 [H]

Identifier: 146338272

GI number: 146338272

Start: 1248518

End: 1248967

Strand: Direct

Name: omp16 [H]

Synonym: BRADO1176

Alternate gene names: 146338272

Gene position: 1248518-1248967 (Clockwise)

Preceding gene: 146338271

Following gene: 146338274

Centisome position: 16.74

GC content: 65.56

Gene sequence:

>450_bases
GTGCTCGCGGTTGCACTGTCGATGGGTGCTTGCGCGAACAAGAGCTTGACCGACGCCAACGCCATGGCGGGCGGCGCGGC
GGCCCCGGGCAGCCAGCAGGACTTCGTGGTGAACGTCGGCGATCGAGTCTTCTTCGAGAGCGATCAGACCGATCTCACGC
CGCAGGCGATCGCCACGCTCGAGAAGCAGGCGCAGTGGCTGCAGAGCTATCCGCGCTACTCCTTCACGATCGAAGGCCAT
GCCGATGAGCGCGGCACCCGCGAGTACAACATCGCCCTCGGCGCGCGCCGGGCGCAGTCGGTGCGCAACTTCCTGGTCTC
GCGCGGCATCGATCAGAGCCGCATGCGCACCATCTCCTATGGCAAGGAGCGGCCGGTCGCCGTGTGTAACGACATCTCCT
GCTGGTCGCAGAACCGTCGTGCCGTCACCGTGCTGAACGCAAGTTCATAA

Upstream 100 bases:

>100_bases
CCATCGCCCTGTAGACCGGATGGCAGTTGAGAACGTGAGCGTGGAGGCTCCGGGAATGAAATATCAAATGCGTATCCTCC
AGGGATTGAAGTTGGCTGCC

Downstream 100 bases:

>100_bases
AGCTGAACAAACTGATTGCTGATGAAGCCGGCGTCGGAGACCGACGCCGGCTTCATCTTTTTGTCTTCGCTTGAACGTCA
TTTGTCTCTATTGCCGTTCT

Product: Outer membrane lipoprotein omp16

Products: NA

Alternate protein names: 16.5 kDa minor OMP; 16 kDa OMP; Minor outer membrane protein omp16 [H]

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MLAVALSMGACANKSLTDANAMAGGAAAPGSQQDFVVNVGDRVFFESDQTDLTPQAIATLEKQAQWLQSYPRYSFTIEGH
ADERGTREYNIALGARRAQSVRNFLVSRGIDQSRMRTISYGKERPVAVCNDISCWSQNRRAVTVLNASS

Sequences:

>Translated_149_residues
MLAVALSMGACANKSLTDANAMAGGAAAPGSQQDFVVNVGDRVFFESDQTDLTPQAIATLEKQAQWLQSYPRYSFTIEGH
ADERGTREYNIALGARRAQSVRNFLVSRGIDQSRMRTISYGKERPVAVCNDISCWSQNRRAVTVLNASS
>Mature_149_residues
MLAVALSMGACANKSLTDANAMAGGAAAPGSQQDFVVNVGDRVFFESDQTDLTPQAIATLEKQAQWLQSYPRYSFTIEGH
ADERGTREYNIALGARRAQSVRNFLVSRGIDQSRMRTISYGKERPVAVCNDISCWSQNRRAVTVLNASS

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=102, Percent_Identity=45.0980392156863, Blast_Score=107, Evalue=4e-25,
Organism=Escherichia coli, GI48994946, Length=116, Percent_Identity=31.8965517241379, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 16251; Mature: 16251

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAVALSMGACANKSLTDANAMAGGAAAPGSQQDFVVNVGDRVFFESDQTDLTPQAIATL
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCHHHHHHH
EKQAQWLQSYPRYSFTIEGHADERGTREYNIALGARRAQSVRNFLVSRGIDQSRMRTISY
HHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHC
GKERPVAVCNDISCWSQNRRAVTVLNASS
CCCCCEEEECCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MLAVALSMGACANKSLTDANAMAGGAAAPGSQQDFVVNVGDRVFFESDQTDLTPQAIATL
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCHHHHHHH
EKQAQWLQSYPRYSFTIEGHADERGTREYNIALGARRAQSVRNFLVSRGIDQSRMRTISY
HHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHC
GKERPVAVCNDISCWSQNRRAVTVLNASS
CCCCCEEEECCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8063379; 10456959 [H]