Click here to switch to the map view.

The map label for this gene is yebC [C]

Identifier: 146338239

GI number: 146338239

Start: 1216651

End: 1217397

Strand: Direct

Name: yebC [C]

Synonym: BRADO1143

Alternate gene names: 146338239

Gene position: 1216651-1217397 (Clockwise)

Preceding gene: 146338235

Following gene: 146338240

Centisome position: 16.32

GC content: 64.52

Gene sequence:

>747_bases
ATGGCCGGCCATTCCCAATTCAAGAACATCATGCATCGCAAGGGCCGGCAGGATGCGATGAAGTCCAAGCTGTTCGGCAA
GCTGGCGCGCGAAATCACCGTCGCCGCCAAGCTCGGCACGCCGGACCCCGCGATGAACCCGCGCCTGCGCGCCGCCGTCG
TCGCTGCCCGCGCCGAGAACATGCCGAAGGACAATATCGAGCGCGCGATCAAAAAGGCGCTCGGCGGCGAGGGTGAGAAC
TACGCCGAGATCCGCTACGAGGGCTATGGCCCCGGCGGCGTCGCGGTGATCGTCGAAGCGCTGACCGACAACCGCAACCG
CGCCGCGTCCGACATCCGCTCCTTCTTCACCAAGTCCGGCGGCAATCTCGGCGAAACCGGCTCGGTGTCGTTCATGTTCG
ACCGCGTCGGCATCATCGAGTTCGACCGCAGTGTCGCCTCCGACGATTCGGTGCTCGATGCCGCGATCGAGGCCGGCGCC
GACGACGTGATCTCGGGCGAGGGCGGCCACGAGGTCTATGCCTCGCCGGACAGTTTTCATGAGGTCGCCAAGAACCTCGA
GGCCAAGTTCGGCGAGCCGCGCAAGGCGGCACTGACCTGGAAACCGCAGAACACGGTCGCGGTCGATGACGAGACGGGCG
AGAAGCTGGTGAAGCTGATGGACCTGCTCAACGAGCATGACGACGTCCAGAACGTCTATGCCAATTTCGAGATCTCGGAC
GCGCTGATGGCGAAGATGGGCGGTTGA

Upstream 100 bases:

>100_bases
GTCCCCCTTGAAACCACCCCAAATCTTTGATTTTGACGATTCCCGGCCTATAAGGCCGCGCGTCCCCACCTGACCTCCAG
ACGATTGCAAGAGATCTCGC

Downstream 100 bases:

>100_bases
CGGACGGTTAACCATCTGGCCGCATGAGCAGCGGGCTGTTCCGTTTATGTTTCCTCCTGGGCGGCGCGAGGCTATCTCTA
ACCCATGAAAGCCCAGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MAGHSQFKNIMHRKGRQDAMKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAVVAARAENMPKDNIERAIKKALGGEGEN
YAEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRVGIIEFDRSVASDDSVLDAAIEAGA
DDVISGEGGHEVYASPDSFHEVAKNLEAKFGEPRKAALTWKPQNTVAVDDETGEKLVKLMDLLNEHDDVQNVYANFEISD
ALMAKMGG

Sequences:

>Translated_248_residues
MAGHSQFKNIMHRKGRQDAMKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAVVAARAENMPKDNIERAIKKALGGEGEN
YAEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRVGIIEFDRSVASDDSVLDAAIEAGA
DDVISGEGGHEVYASPDSFHEVAKNLEAKFGEPRKAALTWKPQNTVAVDDETGEKLVKLMDLLNEHDDVQNVYANFEISD
ALMAKMGG
>Mature_247_residues
AGHSQFKNIMHRKGRQDAMKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAVVAARAENMPKDNIERAIKKALGGEGENY
AEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSGGNLGETGSVSFMFDRVGIIEFDRSVASDDSVLDAAIEAGAD
DVISGEGGHEVYASPDSFHEVAKNLEAKFGEPRKAALTWKPQNTVAVDDETGEKLVKLMDLLNEHDDVQNVYANFEISDA
LMAKMGG

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=246, Percent_Identity=32.1138211382114, Blast_Score=123, Evalue=2e-28,
Organism=Escherichia coli, GI1788171, Length=248, Percent_Identity=45.1612903225806, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI1788294, Length=233, Percent_Identity=38.1974248927039, Blast_Score=152, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17556100, Length=242, Percent_Identity=23.9669421487603, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321458, Length=264, Percent_Identity=34.8484848484849, Blast_Score=124, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24583305, Length=251, Percent_Identity=28.2868525896414, Blast_Score=83, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1143_BRASO (A4YMC4)

Other databases:

- EMBL:   CU234118
- RefSeq:   YP_001203287.1
- ProteinModelPortal:   A4YMC4
- SMR:   A4YMC4
- STRING:   A4YMC4
- GeneID:   5114958
- GenomeReviews:   CU234118_GR
- KEGG:   bra:BRADO1143
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- BioCyc:   BSP376:BRADO1143-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26777; Mature: 26646

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSQFKNIMHRKGRQDAMKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAVVAARAEN
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHCC
MPKDNIERAIKKALGGEGENYAEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSG
CCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC
GNLGETGSVSFMFDRVGIIEFDRSVASDDSVLDAAIEAGADDVISGEGGHEVYASPDSFH
CCCCCCCCEEEEECCCCCEEECCHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHH
EVAKNLEAKFGEPRKAALTWKPQNTVAVDDETGEKLVKLMDLLNEHDDVQNVYANFEISD
HHHHHHHHHCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHH
ALMAKMGG
HHHHHCCC
>Mature Secondary Structure 
AGHSQFKNIMHRKGRQDAMKSKLFGKLAREITVAAKLGTPDPAMNPRLRAAVVAARAEN
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHCC
MPKDNIERAIKKALGGEGENYAEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSFFTKSG
CCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC
GNLGETGSVSFMFDRVGIIEFDRSVASDDSVLDAAIEAGADDVISGEGGHEVYASPDSFH
CCCCCCCCEEEEECCCCCEEECCHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHH
EVAKNLEAKFGEPRKAALTWKPQNTVAVDDETGEKLVKLMDLLNEHDDVQNVYANFEISD
HHHHHHHHHCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHH
ALMAKMGG
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA