| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is gsiD [H]
Identifier: 146338012
GI number: 146338012
Start: 965971
End: 966867
Strand: Direct
Name: gsiD [H]
Synonym: BRADO0905
Alternate gene names: 146338012
Gene position: 965971-966867 (Clockwise)
Preceding gene: 146338011
Following gene: 146338013
Centisome position: 12.95
GC content: 63.66
Gene sequence:
>897_bases GTGAGTTCCCCGAGCGCGATCAACGAGGCTTCGCTGCAGTCCGCGCCGGCCGCGAAGGCGCGCGGCTATTGGGCGACCGT CGGCCGTCGCATCGTCCGTGACAAGGTCAGCATGGTCTGCGTCGCGATCCTGCTGCTGATCTTTCTCTCGGCATTGCTCG CGCCTTATCTGCATCTCGCCGATCCCTATCAGGGCTCGATGATCCGCCGCCTGCGCCACATCGGCACGCCGAACTATCCG CTCGGCACCGACGAACTCGGCCGCGACATGCTGGCGCGGCTGATCCATGGCGGAAGACTGTCGCTGCTGATCGGCATCTC GCCGGTTATCCTCGCCTTCGGAATCGGTACCATGCTCGGCCTCGTCGCGGGCTATGTCGGCGGCTGGGTCAACACCATGA TCATGCGCACCATCGACGTGTTCTACGCGTTCCCTTCGGTGCTGCTGGCGATCGCGATCTCCGGCGCGCTCGGCGCCGGA ATCACCAATTCCATCGTGTCGCTGACAATCGTGTTCGTGCCGCAGATAACCCGCGTCGCCGAGAGTGTCACGACTGGCGT ACGCAATCGCGATTTCGTCGAAGCAGCACGGGCGTCCGGTGCGAACGCATTCACCATTATGCGCGCGCACATGCTTGGCA ACGTGCTCGGGCCGATTTTCGTTTACGCGACTGGTTTGATCTCGGTGTCGATGATCCTTGCTGCCGGCCTGTCGTTCCTC GGCCTCGGCACCAAGCCACCTGAGCCGGAGTGGGGCCTGATGCTGAACACCTTGCGGACCGCGATCTACGTCAATCCGTG GGTGGCGGCGCTGCCGGGCGTGATGATCTTCGCGGTCTCGATCTGCTTCAACCTGCTGAGCGACGGCCTGCGCAGCGCGA TGGATATCCGGAGCTGA
Upstream 100 bases:
>100_bases CGATCCTGGTGCTGGCGATGTTCTTCGTCATCCTCAACCTCGTGGTCGACATCGCGCAGGCCGCGATCGATCCGCGCATC AAGCGGGGCTAGCGATGAGC
Downstream 100 bases:
>100_bases TGCTTGCGATGGTGATGTTGTCGAACAATTGCTCGGCATCGGCGCTGTACCTCTCCCCTTGTGGGAGAGGTCGGATCGCA TCGCCAGATGCAATCCGGGT
Product: putative oligopeptide ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MSSPSAINEASLQSAPAAKARGYWATVGRRIVRDKVSMVCVAILLLIFLSALLAPYLHLADPYQGSMIRRLRHIGTPNYP LGTDELGRDMLARLIHGGRLSLLIGISPVILAFGIGTMLGLVAGYVGGWVNTMIMRTIDVFYAFPSVLLAIAISGALGAG ITNSIVSLTIVFVPQITRVAESVTTGVRNRDFVEAARASGANAFTIMRAHMLGNVLGPIFVYATGLISVSMILAAGLSFL GLGTKPPEPEWGLMLNTLRTAIYVNPWVAALPGVMIFAVSICFNLLSDGLRSAMDIRS
Sequences:
>Translated_298_residues MSSPSAINEASLQSAPAAKARGYWATVGRRIVRDKVSMVCVAILLLIFLSALLAPYLHLADPYQGSMIRRLRHIGTPNYP LGTDELGRDMLARLIHGGRLSLLIGISPVILAFGIGTMLGLVAGYVGGWVNTMIMRTIDVFYAFPSVLLAIAISGALGAG ITNSIVSLTIVFVPQITRVAESVTTGVRNRDFVEAARASGANAFTIMRAHMLGNVLGPIFVYATGLISVSMILAAGLSFL GLGTKPPEPEWGLMLNTLRTAIYVNPWVAALPGVMIFAVSICFNLLSDGLRSAMDIRS >Mature_297_residues SSPSAINEASLQSAPAAKARGYWATVGRRIVRDKVSMVCVAILLLIFLSALLAPYLHLADPYQGSMIRRLRHIGTPNYPL GTDELGRDMLARLIHGGRLSLLIGISPVILAFGIGTMLGLVAGYVGGWVNTMIMRTIDVFYAFPSVLLAIAISGALGAGI TNSIVSLTIVFVPQITRVAESVTTGVRNRDFVEAARASGANAFTIMRAHMLGNVLGPIFVYATGLISVSMILAAGLSFLG LGTKPPEPEWGLMLNTLRTAIYVNPWVAALPGVMIFAVSICFNLLSDGLRSAMDIRS
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1173
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787054, Length=291, Percent_Identity=38.1443298969072, Blast_Score=200, Evalue=8e-53, Organism=Escherichia coli, GI1787760, Length=292, Percent_Identity=31.1643835616438, Blast_Score=159, Evalue=3e-40, Organism=Escherichia coli, GI1789964, Length=297, Percent_Identity=35.3535353535354, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1789889, Length=236, Percent_Identity=36.0169491525424, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1787498, Length=297, Percent_Identity=30.3030303030303, Blast_Score=137, Evalue=6e-34, Organism=Escherichia coli, GI1787549, Length=288, Percent_Identity=29.1666666666667, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1788505, Length=220, Percent_Identity=28.6363636363636, Blast_Score=75, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 31703; Mature: 31572
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPSAINEASLQSAPAAKARGYWATVGRRIVRDKVSMVCVAILLLIFLSALLAPYLHLA CCCCCCCCHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DPYQGSMIRRLRHIGTPNYPLGTDELGRDMLARLIHGGRLSLLIGISPVILAFGIGTMLG CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LVAGYVGGWVNTMIMRTIDVFYAFPSVLLAIAISGALGAGITNSIVSLTIVFVPQITRVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH ESVTTGVRNRDFVEAARASGANAFTIMRAHMLGNVLGPIFVYATGLISVSMILAAGLSFL HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLGTKPPEPEWGLMLNTLRTAIYVNPWVAALPGVMIFAVSICFNLLSDGLRSAMDIRS CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SSPSAINEASLQSAPAAKARGYWATVGRRIVRDKVSMVCVAILLLIFLSALLAPYLHLA CCCCCCCHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DPYQGSMIRRLRHIGTPNYPLGTDELGRDMLARLIHGGRLSLLIGISPVILAFGIGTMLG CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LVAGYVGGWVNTMIMRTIDVFYAFPSVLLAIAISGALGAGITNSIVSLTIVFVPQITRVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH ESVTTGVRNRDFVEAARASGANAFTIMRAHMLGNVLGPIFVYATGLISVSMILAAGLSFL HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLGTKPPEPEWGLMLNTLRTAIYVNPWVAALPGVMIFAVSICFNLLSDGLRSAMDIRS CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA