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The map label for this gene is ybdK [C]

Identifier: 146337969

GI number: 146337969

Start: 913309

End: 914541

Strand: Direct

Name: ybdK [C]

Synonym: BRADO0861

Alternate gene names: 146337969

Gene position: 913309-914541 (Clockwise)

Preceding gene: 146337968

Following gene: 146337973

Centisome position: 12.25

GC content: 65.21

Gene sequence:

>1233_bases
ATGGGATTGGACCCGAAGATCCTCGAACGGCTGCGGCTCGGCCTGAGCGACGACGAGCGTCGGCTCGTGATCCGCTCCGC
CACGGGCGGGGAAGAGGTGACCGAATATTCCTTCGGTATCGAAGAGGAGTACTTCCTCGTCGACGCGAAGACGCTGGATG
TCGCGATCCGCACTCCCGATGATCTGTTCGACGCGGCGAACTGGTCGACCGGCGGGCAGGCGATGCGCGAGATGCTGCAG
GCTCAGCTGGAGGTGGCGACCAACGTTCATGTCGACGTCGGGGATGCGCGCGAGGAGCTAAAATTCCTCCGCCGCGAGGT
GGCGAGCGTTGCTGGCCAGTATGGCCTGACGATCCTCGCCTGCTCGACGCATCCGACCGCGCTGTGGCGCAACTCGCAGC
CCACGCCGAAGCCGCGCTATGCCGAGATGATGGAGGATCTGCGCATCGTCGGCCAGCGCAACATGCTGTGCGGCATGCAC
GTGCACGTCCAGCTGCCGGATCCCGACCGGCGCTTCGCGGTCATGCGCGCGATGATCCCCTATATCCCGGTGTTCATTGC
GCTCTCGGCATCCTCGCCATTCTGGAATTCACGCGAGACGGGGTTGAAGGGCTATCGCCTCGCCGCCTATGACGAGCTGC
CGCGAACCGGCCTGCCGGAACTGTTCACGTCGAAGAAGCAGTACGACCGTTATGTCGCGGCGTTGACCAAGTCCGGCGTG
ATGCCCGACGAGAGTCATGTGTGGTGGGCGATGCGACCGTCGCTGCGGCATCCCACCTTGGAATTGCGCGCGCCCGACGT
CTGCACGGCGGTCGACGACGCCGTGGCGATCGCCTCGCTGTACCGCGCCTTGGCGCGGCATCTTTATCTCAATCCCGAGC
TCGCCGATGCGGTCGGCAACGTCGAACGCGCGATCGCGGTCGAGAACAAATGGCGGGCGCAACGCTACGGTACCGACTGC
CTGTTTGTGACCGAGGATGGTCCCGTGACCGGACAGGAGATCCTCAATCGGACGATCGCCGATGTCGCTGAACATGCCGA
GGCGCTCGGCTGTCTCGCCGAGGTCGAGCGCTGCCGGACCATCATGCAGTTCGGCAGCTCGGCGGACTATCAGCTGCAAG
CCTATCGCGAGTCCGGGGGGCAATTGGCAGCGGTGACGCAATGGATTGCGGCCGCGACGGTATCGCGCGCCGAGCCGCCG
CAGTCGCAGCCGTCTGTCGAGCCGGTGCGATAG

Upstream 100 bases:

>100_bases
GCCGAGATGAGCCCGAAGGGCCATTCGCGCCTCTGGCAGGCGGCTCTGCTGGAAGCCTGGCTGCAGACGCACGGCATTTG
AATCTGACAGGATTGATCAT

Downstream 100 bases:

>100_bases
CGCGGCTCAGCACGTTCGCATCACGCGGCCGTCGCGCGCGATCAGGCGGCCATCTTTGTAGACGGATCGTCCTTTGGGCA
CGGCCGCCACCGCCTCCGGG

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MGLDPKILERLRLGLSDDERRLVIRSATGGEEVTEYSFGIEEEYFLVDAKTLDVAIRTPDDLFDAANWSTGGQAMREMLQ
AQLEVATNVHVDVGDAREELKFLRREVASVAGQYGLTILACSTHPTALWRNSQPTPKPRYAEMMEDLRIVGQRNMLCGMH
VHVQLPDPDRRFAVMRAMIPYIPVFIALSASSPFWNSRETGLKGYRLAAYDELPRTGLPELFTSKKQYDRYVAALTKSGV
MPDESHVWWAMRPSLRHPTLELRAPDVCTAVDDAVAIASLYRALARHLYLNPELADAVGNVERAIAVENKWRAQRYGTDC
LFVTEDGPVTGQEILNRTIADVAEHAEALGCLAEVERCRTIMQFGSSADYQLQAYRESGGQLAAVTQWIAAATVSRAEPP
QSQPSVEPVR

Sequences:

>Translated_410_residues
MGLDPKILERLRLGLSDDERRLVIRSATGGEEVTEYSFGIEEEYFLVDAKTLDVAIRTPDDLFDAANWSTGGQAMREMLQ
AQLEVATNVHVDVGDAREELKFLRREVASVAGQYGLTILACSTHPTALWRNSQPTPKPRYAEMMEDLRIVGQRNMLCGMH
VHVQLPDPDRRFAVMRAMIPYIPVFIALSASSPFWNSRETGLKGYRLAAYDELPRTGLPELFTSKKQYDRYVAALTKSGV
MPDESHVWWAMRPSLRHPTLELRAPDVCTAVDDAVAIASLYRALARHLYLNPELADAVGNVERAIAVENKWRAQRYGTDC
LFVTEDGPVTGQEILNRTIADVAEHAEALGCLAEVERCRTIMQFGSSADYQLQAYRESGGQLAAVTQWIAAATVSRAEPP
QSQPSVEPVR
>Mature_409_residues
GLDPKILERLRLGLSDDERRLVIRSATGGEEVTEYSFGIEEEYFLVDAKTLDVAIRTPDDLFDAANWSTGGQAMREMLQA
QLEVATNVHVDVGDAREELKFLRREVASVAGQYGLTILACSTHPTALWRNSQPTPKPRYAEMMEDLRIVGQRNMLCGMHV
HVQLPDPDRRFAVMRAMIPYIPVFIALSASSPFWNSRETGLKGYRLAAYDELPRTGLPELFTSKKQYDRYVAALTKSGVM
PDESHVWWAMRPSLRHPTLELRAPDVCTAVDDAVAIASLYRALARHLYLNPELADAVGNVERAIAVENKWRAQRYGTDCL
FVTEDGPVTGQEILNRTIADVAEHAEALGCLAEVERCRTIMQFGSSADYQLQAYRESGGQLAAVTQWIAAATVSRAEPPQ
SQPSVEPVR

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=358, Percent_Identity=24.0223463687151, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 45739; Mature: 45608

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLDPKILERLRLGLSDDERRLVIRSATGGEEVTEYSFGIEEEYFLVDAKTLDVAIRTPD
CCCCHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHCCCCCCEEEEEEEEEEEEEECCH
DLFDAANWSTGGQAMREMLQAQLEVATNVHVDVGDAREELKFLRREVASVAGQYGLTILA
HHHHCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEE
CSTHPTALWRNSQPTPKPRYAEMMEDLRIVGQRNMLCGMHVHVQLPDPDRRFAVMRAMIP
ECCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHH
YIPVFIALSASSPFWNSRETGLKGYRLAAYDELPRTGLPELFTSKKQYDRYVAALTKSGV
HHHHHEEEECCCCCCCCCCCCCCCEEEEHHHCCCCCCCHHHHHCHHHHHHHHHHHHHCCC
MPDESHVWWAMRPSLRHPTLELRAPDVCTAVDDAVAIASLYRALARHLYLNPELADAVGN
CCCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
VERAIAVENKWRAQRYGTDCLFVTEDGPVTGQEILNRTIADVAEHAEALGCLAEVERCRT
HHHHHHHHCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMQFGSSADYQLQAYRESGGQLAAVTQWIAAATVSRAEPPQSQPSVEPVR
HHHHCCCCCCEEHEEHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GLDPKILERLRLGLSDDERRLVIRSATGGEEVTEYSFGIEEEYFLVDAKTLDVAIRTPD
CCCHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHCCCCCCEEEEEEEEEEEEEECCH
DLFDAANWSTGGQAMREMLQAQLEVATNVHVDVGDAREELKFLRREVASVAGQYGLTILA
HHHHCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEE
CSTHPTALWRNSQPTPKPRYAEMMEDLRIVGQRNMLCGMHVHVQLPDPDRRFAVMRAMIP
ECCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHH
YIPVFIALSASSPFWNSRETGLKGYRLAAYDELPRTGLPELFTSKKQYDRYVAALTKSGV
HHHHHEEEECCCCCCCCCCCCCCCEEEEHHHCCCCCCCHHHHHCHHHHHHHHHHHHHCCC
MPDESHVWWAMRPSLRHPTLELRAPDVCTAVDDAVAIASLYRALARHLYLNPELADAVGN
CCCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
VERAIAVENKWRAQRYGTDCLFVTEDGPVTGQEILNRTIADVAEHAEALGCLAEVERCRT
HHHHHHHHCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMQFGSSADYQLQAYRESGGQLAAVTQWIAAATVSRAEPPQSQPSVEPVR
HHHHCCCCCCEEHEEHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA