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The map label for this gene is ywbI [H]

Identifier: 146337965

GI number: 146337965

Start: 909349

End: 910230

Strand: Direct

Name: ywbI [H]

Synonym: BRADO0857

Alternate gene names: 146337965

Gene position: 909349-910230 (Clockwise)

Preceding gene: 146337962

Following gene: 146337966

Centisome position: 12.2

GC content: 67.8

Gene sequence:

>882_bases
ATGGAACTCAGAACCCTAAAAACCTTCGTCGAAGTCGTCCGCCAGGGCGGCTTCTCCCACGCCGCCAAAGTGGTGTTCGC
GACGCAGTCGACGGTCAGCAAGGCGGTCAAACAGCTCGAGGACGAGCTCGGCCTGCCGCTGCTCGACCGGCTCGGCCACA
AGAGCCGCATGACCGCGGCAGGCGAGATCGTCTACCGCCGCGCCATCCGGCTGCTGGCGGAGCGCGATGACCTGCAGGCG
GAACTCGAGGAGTTGCGCGGGCTGAAGCGCGGCGTGCTGCGCCTCGGCCTGCCGCCGATCGGATCGAGCACGCTGTTCGC
GCCGCTGTTTGCGCTTTATCGCCAGCTTTATCCGGAGATCGAGATCCGGCTGGTCGAGCATGGCAGCGACCGGTTGAGCG
AGATGCTCGCCGCCGGCGATATCGACTTTGCCGGCCTGCTGCCGCCGATCGCCGACGAGTTCGCCGCGCAGATCGTGCGC
CGCGAGCCGCTAATGGCGCTGGTGTCGGTCGATCATCCGCTGGCGCGCCGTGAGACGATCACGCTGGCCGAACTGCGCGA
CACGCCGTTCGTCCTGTTCGAAGCGGGGTTCGCGCTCAACCGCATCCTGCGCGAGGCGTGCCGACGCAACGGCTTCGAGC
CGATCGTGGCGGCGCGCAGCACGCAGATCGACTTCATCGCCGAGCTGGCCGGCGCCGGACTCGGGGTCGCCTTCCTGCCG
CGCATGATCGCCACTCAACGCACGCAAGTTCCGATCAGCCTCGTGTTGCTCGACGAGCCGGATACGGAATGGACCCTGGC
GATGGCTTGGCGCCGCGGCGCCTATCTTTCGCCTGCGGCCGCGGCGTGGCTCAGATTGGTGAGGGAGCGCGGGGAGGCGT
AA

Upstream 100 bases:

>100_bases
CAAGAACCTCTAAGTGCGCAAATAATATTCCGCAACGCAGCATGTATAAAATGAATTGATTGACTGATCTTCAGTCCGAA
TAAGAATAGTAAACTCAATT

Downstream 100 bases:

>100_bases
GCAAAGCGCGACGATGTCGCACGTCACATGAGGGAACGTGGGACCCGTCGGACGGTTGTCGCGGTCGATGTTGTGCTGGC
AGTTGTGCCGGCAGGATGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MELRTLKTFVEVVRQGGFSHAAKVVFATQSTVSKAVKQLEDELGLPLLDRLGHKSRMTAAGEIVYRRAIRLLAERDDLQA
ELEELRGLKRGVLRLGLPPIGSSTLFAPLFALYRQLYPEIEIRLVEHGSDRLSEMLAAGDIDFAGLLPPIADEFAAQIVR
REPLMALVSVDHPLARRETITLAELRDTPFVLFEAGFALNRILREACRRNGFEPIVAARSTQIDFIAELAGAGLGVAFLP
RMIATQRTQVPISLVLLDEPDTEWTLAMAWRRGAYLSPAAAAWLRLVRERGEA

Sequences:

>Translated_293_residues
MELRTLKTFVEVVRQGGFSHAAKVVFATQSTVSKAVKQLEDELGLPLLDRLGHKSRMTAAGEIVYRRAIRLLAERDDLQA
ELEELRGLKRGVLRLGLPPIGSSTLFAPLFALYRQLYPEIEIRLVEHGSDRLSEMLAAGDIDFAGLLPPIADEFAAQIVR
REPLMALVSVDHPLARRETITLAELRDTPFVLFEAGFALNRILREACRRNGFEPIVAARSTQIDFIAELAGAGLGVAFLP
RMIATQRTQVPISLVLLDEPDTEWTLAMAWRRGAYLSPAAAAWLRLVRERGEA
>Mature_293_residues
MELRTLKTFVEVVRQGGFSHAAKVVFATQSTVSKAVKQLEDELGLPLLDRLGHKSRMTAAGEIVYRRAIRLLAERDDLQA
ELEELRGLKRGVLRLGLPPIGSSTLFAPLFALYRQLYPEIEIRLVEHGSDRLSEMLAAGDIDFAGLLPPIADEFAAQIVR
REPLMALVSVDHPLARRETITLAELRDTPFVLFEAGFALNRILREACRRNGFEPIVAARSTQIDFIAELAGAGLGVAFLP
RMIATQRTQVPISLVLLDEPDTEWTLAMAWRRGAYLSPAAAAWLRLVRERGEA

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=288, Percent_Identity=30.2083333333333, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787879, Length=292, Percent_Identity=31.1643835616438, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788887, Length=299, Percent_Identity=30.4347826086957, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI145693105, Length=298, Percent_Identity=24.8322147651007, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790399, Length=278, Percent_Identity=26.2589928057554, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787530, Length=290, Percent_Identity=27.9310344827586, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=26.7123287671233, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786401, Length=120, Percent_Identity=37.5, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788481, Length=281, Percent_Identity=25.9786476868327, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788296, Length=252, Percent_Identity=23.015873015873, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=28.9156626506024, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789639, Length=123, Percent_Identity=32.520325203252, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786713, Length=287, Percent_Identity=29.616724738676, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=144, Percent_Identity=26.3888888888889, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI2367136, Length=243, Percent_Identity=22.6337448559671, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081904, Length=201, Percent_Identity=26.3681592039801, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789506, Length=298, Percent_Identity=22.8187919463087, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790208, Length=246, Percent_Identity=23.1707317073171, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI145693193, Length=138, Percent_Identity=28.2608695652174, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32560; Mature: 32560

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRTLKTFVEVVRQGGFSHAAKVVFATQSTVSKAVKQLEDELGLPLLDRLGHKSRMTAA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHH
GEIVYRRAIRLLAERDDLQAELEELRGLKRGVLRLGLPPIGSSTLFAPLFALYRQLYPEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
EIRLVEHGSDRLSEMLAAGDIDFAGLLPPIADEFAAQIVRREPLMALVSVDHPLARRETI
EEEEECCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHH
TLAELRDTPFVLFEAGFALNRILREACRRNGFEPIVAARSTQIDFIAELAGAGLGVAFLP
HHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCHHHHHH
RMIATQRTQVPISLVLLDEPDTEWTLAMAWRRGAYLSPAAAAWLRLVRERGEA
HHHHHCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELRTLKTFVEVVRQGGFSHAAKVVFATQSTVSKAVKQLEDELGLPLLDRLGHKSRMTAA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHH
GEIVYRRAIRLLAERDDLQAELEELRGLKRGVLRLGLPPIGSSTLFAPLFALYRQLYPEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
EIRLVEHGSDRLSEMLAAGDIDFAGLLPPIADEFAAQIVRREPLMALVSVDHPLARRETI
EEEEECCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHH
TLAELRDTPFVLFEAGFALNRILREACRRNGFEPIVAARSTQIDFIAELAGAGLGVAFLP
HHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCHHHHHH
RMIATQRTQVPISLVLLDEPDTEWTLAMAWRRGAYLSPAAAAWLRLVRERGEA
HHHHHCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]