| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ykvO [H]
Identifier: 146337192
GI number: 146337192
Start: 23302
End: 24057
Strand: Direct
Name: ykvO [H]
Synonym: BRADO0018
Alternate gene names: 146337192
Gene position: 23302-24057 (Clockwise)
Preceding gene: 146337190
Following gene: 146337193
Centisome position: 0.31
GC content: 67.33
Gene sequence:
>756_bases ATGGCCCAGAAACTCAGCGAAAAGATCGCCGTCGTGACCGGCGGAACCAGCGGCATCGGCCTCGCCTCCGCCAAGCGCTT CGCCGCCGAAGGCGCCCACGTCTATGTCACCGGCCGTCGGAGGCCGGAGCTGGAAGCCGCGGTGACCGCGATCGGCCGGA GTGCGACCGGCGTCCAGGCGGATGCCACCAAGCTCTCGGACCTCGACGCGCTCTATCAGAAGGTGAAGCAGGATGTCGGC CGCATCGACGTGCTGTTCGTCAATGCCGGCGGCGGCTCGATGCTGCCGCTCGGACAGATTACCGAGCAGCAATATGACGA CACGTTCGATCGCAACGTGAAGGGCGTGCTGTTCACCGTGCAGAAGGCGCTGCCGCTGCTGCGCGACGGCGCCTCGGTGA TCCTGACCGGCTCCACAGCCGGCACCGAAGGCACGCCCGCCTTCAGCGTCTACGGCGCCTCGAAGGCCGCGGTGCGTGCC TTCGCGCGCAACTGGATCCTCGATCTCAAGGACCGGCGCATTCGCGTCAATACCTTGAGCCCCGGCGCAACCAAGACTCC GGGCCTCGTCGAGCTCGCCGGTCCGGACGCCGCGCAGCAGCAGGGGCTGCTCGACTATCTCGCCTCACGCATTCCGCTCG GACGCGTGGGCGATCCCGACGAGATCGCCAAAGCGGCGGTGTTCCTCGCCTCCGACGATTCCAGCTTCGTCAACGGCGCC GAACTGTTCGTCGATGGCGGACAGGCGCAGGTGTGA
Upstream 100 bases:
>100_bases GACATCCACTTTCCTGCAACGATGACTTTCAACTGTTTCTATATCGGAGTTGCAGGCGTTTCGCCATCCTCTGCTGGCCA ACACGACAGGAGAGACCCCC
Downstream 100 bases:
>100_bases AGCAAGCCATCGCCGTAACCGCTATATTGCAGCGAGCCGTTGAAGGTTATCGACCACGATTAGCACCGCGTGCGACGTTG CCGTACGCGGGCGCCTATGA
Product: putative short-chain dehydrogenases/reductases (SDR) family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MAQKLSEKIAVVTGGTSGIGLASAKRFAAEGAHVYVTGRRRPELEAAVTAIGRSATGVQADATKLSDLDALYQKVKQDVG RIDVLFVNAGGGSMLPLGQITEQQYDDTFDRNVKGVLFTVQKALPLLRDGASVILTGSTAGTEGTPAFSVYGASKAAVRA FARNWILDLKDRRIRVNTLSPGATKTPGLVELAGPDAAQQQGLLDYLASRIPLGRVGDPDEIAKAAVFLASDDSSFVNGA ELFVDGGQAQV
Sequences:
>Translated_251_residues MAQKLSEKIAVVTGGTSGIGLASAKRFAAEGAHVYVTGRRRPELEAAVTAIGRSATGVQADATKLSDLDALYQKVKQDVG RIDVLFVNAGGGSMLPLGQITEQQYDDTFDRNVKGVLFTVQKALPLLRDGASVILTGSTAGTEGTPAFSVYGASKAAVRA FARNWILDLKDRRIRVNTLSPGATKTPGLVELAGPDAAQQQGLLDYLASRIPLGRVGDPDEIAKAAVFLASDDSSFVNGA ELFVDGGQAQV >Mature_250_residues AQKLSEKIAVVTGGTSGIGLASAKRFAAEGAHVYVTGRRRPELEAAVTAIGRSATGVQADATKLSDLDALYQKVKQDVGR IDVLFVNAGGGSMLPLGQITEQQYDDTFDRNVKGVLFTVQKALPLLRDGASVILTGSTAGTEGTPAFSVYGASKAAVRAF ARNWILDLKDRRIRVNTLSPGATKTPGLVELAGPDAAQQQGLLDYLASRIPLGRVGDPDEIAKAAVFLASDDSSFVNGAE LFVDGGQAQV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=33.3333333333333, Blast_Score=130, Evalue=1e-30, Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=33.7349397590361, Blast_Score=117, Evalue=9e-27, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=31.7460317460317, Blast_Score=114, Evalue=8e-26, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=33.7301587301587, Blast_Score=110, Evalue=9e-25, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=30.0813008130081, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=35.978835978836, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=34.8066298342541, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=28.735632183908, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI7705925, Length=251, Percent_Identity=27.4900398406374, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=24.0157480314961, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=29.2, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI59889578, Length=199, Percent_Identity=35.1758793969849, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=29.1338582677165, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4503301, Length=226, Percent_Identity=27.4336283185841, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI223718074, Length=248, Percent_Identity=28.2258064516129, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI209862901, Length=221, Percent_Identity=26.6968325791855, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI19923983, Length=221, Percent_Identity=26.6968325791855, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=30.952380952381, Blast_Score=117, Evalue=5e-28, Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=31.4741035856574, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=32.4, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=31.1740890688259, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=32.4, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787905, Length=252, Percent_Identity=32.9365079365079, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=32.2709163346614, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=31.638418079096, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=30.4878048780488, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=29.8804780876494, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=30.4, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=28.6274509803922, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787526, Length=192, Percent_Identity=30.7291666666667, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1786701, Length=186, Percent_Identity=30.6451612903226, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=27.734375, Blast_Score=66, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=32.4528301886792, Blast_Score=121, Evalue=3e-28, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=31.3253012048193, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=32.9545454545455, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=32.9545454545455, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=33.969465648855, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=32.319391634981, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=35.3383458646617, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=32.9545454545455, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=32.5757575757576, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=32.5757575757576, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=34.0823970037453, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17551412, Length=272, Percent_Identity=33.0882352941176, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=32, Blast_Score=106, Evalue=9e-24, Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=32.5842696629214, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=32.3076923076923, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=31.4393939393939, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=32.3886639676113, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=29.4573643410853, Blast_Score=104, Evalue=3e-23, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=33.4600760456274, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=31.4393939393939, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=32.0158102766798, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=31.3492063492063, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=28.735632183908, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=28.6821705426357, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=30, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=29.4117647058824, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=30.078125, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=28.4584980237154, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=25.7894736842105, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI193207185, Length=145, Percent_Identity=33.1034482758621, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=26.8774703557312, Blast_Score=87, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=30.9644670050761, Blast_Score=80, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6322067, Length=178, Percent_Identity=30.8988764044944, Blast_Score=79, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6322227, Length=194, Percent_Identity=26.8041237113402, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=36.9918699186992, Blast_Score=129, Evalue=1e-30, Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=30.5882352941176, Blast_Score=124, Evalue=5e-29, Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=32, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=32.9268292682927, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=32.9365079365079, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=33.7301587301587, Blast_Score=111, Evalue=3e-25, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=32.2834645669291, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=31.7460317460317, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=26.8482490272374, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI116007238, Length=191, Percent_Identity=29.3193717277487, Blast_Score=71, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26219; Mature: 26088
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQKLSEKIAVVTGGTSGIGLASAKRFAAEGAHVYVTGRRRPELEAAVTAIGRSATGVQA CCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC DATKLSDLDALYQKVKQDVGRIDVLFVNAGGGSMLPLGQITEQQYDDTFDRNVKGVLFTV CHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCHHEEEH QKALPLLRDGASVILTGSTAGTEGTPAFSVYGASKAAVRAFARNWILDLKDRRIRVNTLS HHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHEEECCCCEEEEEECC PGATKTPGLVELAGPDAAQQQGLLDYLASRIPLGRVGDPDEIAKAAVFLASDDSSFVNGA CCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHEEEEEECCCCCCCCCE ELFVDGGQAQV EEEEECCCCCC >Mature Secondary Structure AQKLSEKIAVVTGGTSGIGLASAKRFAAEGAHVYVTGRRRPELEAAVTAIGRSATGVQA CCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC DATKLSDLDALYQKVKQDVGRIDVLFVNAGGGSMLPLGQITEQQYDDTFDRNVKGVLFTV CHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCHHEEEH QKALPLLRDGASVILTGSTAGTEGTPAFSVYGASKAAVRAFARNWILDLKDRRIRVNTLS HHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHEEECCCCEEEEEECC PGATKTPGLVELAGPDAAQQQGLLDYLASRIPLGRVGDPDEIAKAAVFLASDDSSFVNGA CCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHEEEEEECCCCCCCCCE ELFVDGGQAQV EEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]