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The map label for this gene is ycbB [H]

Identifier: 146302694

GI number: 146302694

Start: 6003584

End: 6005155

Strand: Reverse

Name: ycbB [H]

Synonym: Fjoh_4967

Alternate gene names: 146302694

Gene position: 6005155-6003584 (Counterclockwise)

Preceding gene: 146302695

Following gene: 146302692

Centisome position: 98.5

GC content: 33.46

Gene sequence:

>1572_bases
ATGAAAATTTGGTGTTCATTTATCGCTTTTGTGTTTCTGTTTTTAGCAGTTTCCTGTAAAGGAGATAAAAAAGAAGAAAA
TCAAAAGAAAGAAAAAGCAGTTGTCCCTGAACTCAGGCTTACGATAGATACAACGGCTATTGCAAGTTTTTATGAGACTT
ACCCGAAATTGAAAAATTTTGAAGAGCAGGTTAAATCCTTATATAAAAAGAAAAACGCCACACAATTATGGCTTGATAAT
AAAGGTGTAGTGGAGTTTGGAAATACTTTGTTTAATAAATACAAAGGATTAGAAAACGAAGGGTTAAAAGCAAATTTTCC
GTACAAAGAAATCAATGCTGTTTTTGAAGGAAATGCTGATAATAAACTTTCAAAAGTGAATACAGATTTAATGATTACAA
ATTTGTATTTCTACTATGCCGAAAAAGTATACAGGGGATTTGATGAAAAAACTTCGATTTCATTAGAATGGCTTCTGCCA
AGAAAAAAACTAAATTATCAGGTTTTCTCAGATTCTATTTTTGAAAAATCGACTATAAACGACGATAAGAAAAGTAAAAT
GTTCAGCCAGTATTACAAACTGCGCGATGCTCTTAAACGTTATAGAGAAATAGAAAAAAATGGAGGCTGGAAAACCATAG
AAATTGATGATGCTTATAAGAGTTTAAAACTTGGAGATTCATCTCCAATTGTTTCTCAAATAAGAGAAAGACTTTTTATT
ACTCAGGATATTAAAGAAGACAATAAAAGTGCAGTCTGCGATTCTACTTTAATAAAAGGATTAAAAAGTTATGAACTGCA
TCATGGTTTTGCACCAAAAAATACGATTCTTCCAGAACATATTACCGATTTGAATATTCCGGTTTCAGACCGTATTAAAA
CCATTATTGTAAATATGGAACGCTGCCGATGGATTGATCCTAAACTTGAAAAAGGACAGCAGTATATCGAAGTAAATATT
CCTGAATTTAAATTATATCTTATCCGCGACAGACAAATTGCATTTACTTCTCCGGTTGTGGTTGGAAAAGCGATGACCAA
AACGGTTATTTTCAGCGGAACAATGAGTAATATTGTTTTCAGTCCGTACTGGAATGTGCCTCCAAGTATTATTGCTAAAG
AGATAAAACCCGGAATGGCTAAAAATAAAAACTATCTGGCTCAGAAAAACCTTGAATGGAACAATGGCGCCGTTCGTCAG
CTTCCAGGGAAAAATAATTCACTTGGTTTAGTGAAATTTTTGTTTCCAAATTCAAGCAATATTTATCTGCACGATACGCC
GTCAAAAAGTTTGTTTGAGAGAGAAAGCAGAGCCTTTAGCCACGGATGCGTGCGTGTAGCAAAACCTCGTGAACTGGCAA
TTGAAATATTAAAAGAAGATCCAAAATGGACGGAAGCCCGAATTGATAAAGCCATGCATGCAGGAAAAGAAAGCTGGTAC
ACTATAAAGAAAAAATTCCCAGTTTATATAGGATATTTTACTGCATGGGTAGACCGCGAAGGCAATTTAAATTTTTATAA
AGACATTTATCAAAGAGATGAAAGTCTGCTTAAATTATTGACAGAAGAATAA

Upstream 100 bases:

>100_bases
AATGTATTTGGAGCTTTTTTTGTCTTAATTTAATGTTTTTTTATTTTTTGAGGAGCTTTGTTTTTATCAAAACTTTTCTA
CTTTTATCAAAAAAAATAGT

Downstream 100 bases:

>100_bases
AAAGATTTAAACTCCAATTTTGAAATTCCAAATTTTCAAAAAAAGTTTATTGTCTACTGCCACGGATTAAAGGATTTAAG
AGATTATAAAATTTCTGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MKIWCSFIAFVFLFLAVSCKGDKKEENQKKEKAVVPELRLTIDTTAIASFYETYPKLKNFEEQVKSLYKKKNATQLWLDN
KGVVEFGNTLFNKYKGLENEGLKANFPYKEINAVFEGNADNKLSKVNTDLMITNLYFYYAEKVYRGFDEKTSISLEWLLP
RKKLNYQVFSDSIFEKSTINDDKKSKMFSQYYKLRDALKRYREIEKNGGWKTIEIDDAYKSLKLGDSSPIVSQIRERLFI
TQDIKEDNKSAVCDSTLIKGLKSYELHHGFAPKNTILPEHITDLNIPVSDRIKTIIVNMERCRWIDPKLEKGQQYIEVNI
PEFKLYLIRDRQIAFTSPVVVGKAMTKTVIFSGTMSNIVFSPYWNVPPSIIAKEIKPGMAKNKNYLAQKNLEWNNGAVRQ
LPGKNNSLGLVKFLFPNSSNIYLHDTPSKSLFERESRAFSHGCVRVAKPRELAIEILKEDPKWTEARIDKAMHAGKESWY
TIKKKFPVYIGYFTAWVDREGNLNFYKDIYQRDESLLKLLTEE

Sequences:

>Translated_523_residues
MKIWCSFIAFVFLFLAVSCKGDKKEENQKKEKAVVPELRLTIDTTAIASFYETYPKLKNFEEQVKSLYKKKNATQLWLDN
KGVVEFGNTLFNKYKGLENEGLKANFPYKEINAVFEGNADNKLSKVNTDLMITNLYFYYAEKVYRGFDEKTSISLEWLLP
RKKLNYQVFSDSIFEKSTINDDKKSKMFSQYYKLRDALKRYREIEKNGGWKTIEIDDAYKSLKLGDSSPIVSQIRERLFI
TQDIKEDNKSAVCDSTLIKGLKSYELHHGFAPKNTILPEHITDLNIPVSDRIKTIIVNMERCRWIDPKLEKGQQYIEVNI
PEFKLYLIRDRQIAFTSPVVVGKAMTKTVIFSGTMSNIVFSPYWNVPPSIIAKEIKPGMAKNKNYLAQKNLEWNNGAVRQ
LPGKNNSLGLVKFLFPNSSNIYLHDTPSKSLFERESRAFSHGCVRVAKPRELAIEILKEDPKWTEARIDKAMHAGKESWY
TIKKKFPVYIGYFTAWVDREGNLNFYKDIYQRDESLLKLLTEE
>Mature_523_residues
MKIWCSFIAFVFLFLAVSCKGDKKEENQKKEKAVVPELRLTIDTTAIASFYETYPKLKNFEEQVKSLYKKKNATQLWLDN
KGVVEFGNTLFNKYKGLENEGLKANFPYKEINAVFEGNADNKLSKVNTDLMITNLYFYYAEKVYRGFDEKTSISLEWLLP
RKKLNYQVFSDSIFEKSTINDDKKSKMFSQYYKLRDALKRYREIEKNGGWKTIEIDDAYKSLKLGDSSPIVSQIRERLFI
TQDIKEDNKSAVCDSTLIKGLKSYELHHGFAPKNTILPEHITDLNIPVSDRIKTIIVNMERCRWIDPKLEKGQQYIEVNI
PEFKLYLIRDRQIAFTSPVVVGKAMTKTVIFSGTMSNIVFSPYWNVPPSIIAKEIKPGMAKNKNYLAQKNLEWNNGAVRQ
LPGKNNSLGLVKFLFPNSSNIYLHDTPSKSLFERESRAFSHGCVRVAKPRELAIEILKEDPKWTEARIDKAMHAGKESWY
TIKKKFPVYIGYFTAWVDREGNLNFYKDIYQRDESLLKLLTEE

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=349, Percent_Identity=30.6590257879656, Blast_Score=160, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 60793; Mature: 60793

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIWCSFIAFVFLFLAVSCKGDKKEENQKKEKAVVPELRLTIDTTAIASFYETYPKLKNF
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCH
EEQVKSLYKKKNATQLWLDNKGVVEFGNTLFNKYKGLENEGLKANFPYKEINAVFEGNAD
HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHEECCCCC
NKLSKVNTDLMITNLYFYYAEKVYRGFDEKTSISLEWLLPRKKLNYQVFSDSIFEKSTIN
CCHHHCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHCCEEEHHHHHHHHCCCC
DDKKSKMFSQYYKLRDALKRYREIEKNGGWKTIEIDDAYKSLKLGDSSPIVSQIRERLFI
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCHHHHHHHHHHHH
TQDIKEDNKSAVCDSTLIKGLKSYELHHGFAPKNTILPEHITDLNIPVSDRIKTIIVNME
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCHHHHHHEEEEEHH
RCRWIDPKLEKGQQYIEVNIPEFKLYLIRDRQIAFTSPVVVGKAMTKTVIFSGTMSNIVF
HHCCCCCHHHCCCEEEEEECCCEEEEEEECCEEEECCCHHHHHHHHHHEEEECCHHHCEE
SPYWNVPPSIIAKEIKPGMAKNKNYLAQKNLEWNNGAVRQLPGKNNSLGLVKFLFPNSSN
CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEECCCCE
IYLHDTPSKSLFERESRAFSHGCVRVAKPRELAIEILKEDPKWTEARIDKAMHAGKESWY
EEEEECCCHHHHHHHHHHHHHCCEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEE
TIKKKFPVYIGYFTAWVDREGNLNFYKDIYQRDESLLKLLTEE
EEEECCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIWCSFIAFVFLFLAVSCKGDKKEENQKKEKAVVPELRLTIDTTAIASFYETYPKLKNF
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCH
EEQVKSLYKKKNATQLWLDNKGVVEFGNTLFNKYKGLENEGLKANFPYKEINAVFEGNAD
HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHEECCCCC
NKLSKVNTDLMITNLYFYYAEKVYRGFDEKTSISLEWLLPRKKLNYQVFSDSIFEKSTIN
CCHHHCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHCCEEEHHHHHHHHCCCC
DDKKSKMFSQYYKLRDALKRYREIEKNGGWKTIEIDDAYKSLKLGDSSPIVSQIRERLFI
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCHHHHHHHHHHHH
TQDIKEDNKSAVCDSTLIKGLKSYELHHGFAPKNTILPEHITDLNIPVSDRIKTIIVNME
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCHHHHHHEEEEEHH
RCRWIDPKLEKGQQYIEVNIPEFKLYLIRDRQIAFTSPVVVGKAMTKTVIFSGTMSNIVF
HHCCCCCHHHCCCEEEEEECCCEEEEEEECCEEEECCCHHHHHHHHHHEEEECCHHHCEE
SPYWNVPPSIIAKEIKPGMAKNKNYLAQKNLEWNNGAVRQLPGKNNSLGLVKFLFPNSSN
CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEECCCCE
IYLHDTPSKSLFERESRAFSHGCVRVAKPRELAIEILKEDPKWTEARIDKAMHAGKESWY
EEEEECCCHHHHHHHHHHHHHCCEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEE
TIKKKFPVYIGYFTAWVDREGNLNFYKDIYQRDESLLKLLTEE
EEEECCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]