| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146302668
Identifier: 146302668
GI number: 146302668
Start: 5968125
End: 5969630
Strand: Direct
Name: 146302668
Synonym: Fjoh_4941
Alternate gene names: NA
Gene position: 5968125-5969630 (Clockwise)
Preceding gene: 146302667
Following gene: 146302669
Centisome position: 97.89
GC content: 35.26
Gene sequence:
>1506_bases ATGAAAAAAATATTATTCCTATTTATTACAGGACTGACTGTCAGCGTCTCATATTCTCAGGAAGTTTCTGACGCTGTACG ATATGCACAAGACAATTTGACCGGAACTGCAAGATTCAGAGCAATGAGCGGTGCTTTTGGAGCTGTTGGAGGAGATTTAT CTGCCATTACTGTAAATCCTGCCGGATCTGCCGTATTTAACAATAATCAGGTTGGAGTTTCTTTTAGCAATCAAAATATT AAAAACAACTCTAACTATTTCGGAACTCAAACTTCTGATAAAGAGAATTCTTTTATTTTAAATCAAGCCGGAGCTGTTTT TGTTTTTAAAGACCATAATCCAAATAACGGATGGAACAAAATTGCGATTGGCGCCAGTTACGAAAACACTAATAATTTTG ACAATAATGTTTTTTCTGCCGGCACAAATCCAACAAATTCTATTGGATCATATTTTGTAAATTTTGCTAATGGAATTGAA TTAGGAAACATAACCGGAATTCCTTACAGAGATCAGTTTTACAACGAACAACAGGCTTACTTTGGATATTATGGACACGT AATTAATCCTGTTAACGAAAACAGTAATACAAACACACAATACACATCAAACGTTCCTGCAGGTGGAAACTACTATCAAG AAAATGGAATTCACACAAGCGGATACAATAGTAAATTAAGTTTCAATATTGCAAGTTCTTACAAAGACAGACTTTATTTC GGAGCAAACTTAAATGTTCACGTTACAGATTATAGGAGATCAAGCAGTTTTTACGAAGATAACTCTAATCCGTTACAGCC TACTGCAACTATTTCTAATTTACGTTTCAATAATGAACTTTACACATACGGAAACGGCTTTTCTTTTCAGCTAGGAGCTA TTGCAAAAGTAACAGAAGCATTCAGACTTGGTTTAGCCTATGAATCGAATACCTGGTACAGTCTTTATGACGAAGTATCT CAAAGCCTTGGCACAACAAGACAAGCAACTGGAGGACCGGAAATTTTTGAAAACATAAACCCAAACGTTGTAAATGTATA CGAATCTTATACATTACAAACACCAGGTAAGTTTACTTTCAGCGGTGCTTATGTTTTTGGAAAATCAGGCTTAATTAGTT TAGATTACTCAATTAAAGACTACAGCAACACTAAATTTAAACCAACAAACGATGCGGGCTTTAGAGGAGTTAACAACGAC ATCAGCAATCAGCTTACTACTGCCGGGGAATTAAGAGTTGGTGCTGAATACAAAATAAAACAATTGAGTTTACGAGGCGG ATATCGTTTTGAAGGAAGCCCTTATAAAAACGGAACTACAATTGGAGACTTAAACAGCTATTCTGGAGGTTTAGGGTATA GCTTTGGTTCTACAAAATTAGATCTGGCTTACTCTTATTTAGAAAGAAAATCTAACCAAGGTTTCTTTACAACAGGACTT ACTGACGGCGCAAACATTACATCAAAGTTAAACAATGTGACTTTGACCTTATTATTTGAATTGTAA
Upstream 100 bases:
>100_bases GGTGGCGGCGGAGGAAGATCTTACGGTGGCGGAGGAGGCGGAAGAAGGTAACATTTTCGTCCTTTTTCCAATCTAATATC ACACACTAAATACTTACCCA
Downstream 100 bases:
>100_bases TTAAGAATAAATAGATGAATGGAAATTTCCGTCAGGTTTACTTGGCGGATTTTTTTTGACTGAAAATTACTAGAAACCTT TATAAAAAACATCGAAATGA
Product: aromatic hydrocarbon degradation membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 501; Mature: 501
Protein sequence:
>501_residues MKKILFLFITGLTVSVSYSQEVSDAVRYAQDNLTGTARFRAMSGAFGAVGGDLSAITVNPAGSAVFNNNQVGVSFSNQNI KNNSNYFGTQTSDKENSFILNQAGAVFVFKDHNPNNGWNKIAIGASYENTNNFDNNVFSAGTNPTNSIGSYFVNFANGIE LGNITGIPYRDQFYNEQQAYFGYYGHVINPVNENSNTNTQYTSNVPAGGNYYQENGIHTSGYNSKLSFNIASSYKDRLYF GANLNVHVTDYRRSSSFYEDNSNPLQPTATISNLRFNNELYTYGNGFSFQLGAIAKVTEAFRLGLAYESNTWYSLYDEVS QSLGTTRQATGGPEIFENINPNVVNVYESYTLQTPGKFTFSGAYVFGKSGLISLDYSIKDYSNTKFKPTNDAGFRGVNND ISNQLTTAGELRVGAEYKIKQLSLRGGYRFEGSPYKNGTTIGDLNSYSGGLGYSFGSTKLDLAYSYLERKSNQGFFTTGL TDGANITSKLNNVTLTLLFEL
Sequences:
>Translated_501_residues MKKILFLFITGLTVSVSYSQEVSDAVRYAQDNLTGTARFRAMSGAFGAVGGDLSAITVNPAGSAVFNNNQVGVSFSNQNI KNNSNYFGTQTSDKENSFILNQAGAVFVFKDHNPNNGWNKIAIGASYENTNNFDNNVFSAGTNPTNSIGSYFVNFANGIE LGNITGIPYRDQFYNEQQAYFGYYGHVINPVNENSNTNTQYTSNVPAGGNYYQENGIHTSGYNSKLSFNIASSYKDRLYF GANLNVHVTDYRRSSSFYEDNSNPLQPTATISNLRFNNELYTYGNGFSFQLGAIAKVTEAFRLGLAYESNTWYSLYDEVS QSLGTTRQATGGPEIFENINPNVVNVYESYTLQTPGKFTFSGAYVFGKSGLISLDYSIKDYSNTKFKPTNDAGFRGVNND ISNQLTTAGELRVGAEYKIKQLSLRGGYRFEGSPYKNGTTIGDLNSYSGGLGYSFGSTKLDLAYSYLERKSNQGFFTTGL TDGANITSKLNNVTLTLLFEL >Mature_501_residues MKKILFLFITGLTVSVSYSQEVSDAVRYAQDNLTGTARFRAMSGAFGAVGGDLSAITVNPAGSAVFNNNQVGVSFSNQNI KNNSNYFGTQTSDKENSFILNQAGAVFVFKDHNPNNGWNKIAIGASYENTNNFDNNVFSAGTNPTNSIGSYFVNFANGIE LGNITGIPYRDQFYNEQQAYFGYYGHVINPVNENSNTNTQYTSNVPAGGNYYQENGIHTSGYNSKLSFNIASSYKDRLYF GANLNVHVTDYRRSSSFYEDNSNPLQPTATISNLRFNNELYTYGNGFSFQLGAIAKVTEAFRLGLAYESNTWYSLYDEVS QSLGTTRQATGGPEIFENINPNVVNVYESYTLQTPGKFTFSGAYVFGKSGLISLDYSIKDYSNTKFKPTNDAGFRGVNND ISNQLTTAGELRVGAEYKIKQLSLRGGYRFEGSPYKNGTTIGDLNSYSGGLGYSFGSTKLDLAYSYLERKSNQGFFTTGL TDGANITSKLNNVTLTLLFEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55025; Mature: 55025
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKILFLFITGLTVSVSYSQEVSDAVRYAQDNLTGTARFRAMSGAFGAVGGDLSAITVNP CCEEEEEEEECEEEEEECHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEEECC AGSAVFNNNQVGVSFSNQNIKNNSNYFGTQTSDKENSFILNQAGAVFVFKDHNPNNGWNK CCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCE IAIGASYENTNNFDNNVFSAGTNPTNSIGSYFVNFANGIELGNITGIPYRDQFYNEQQAY EEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHCCCCHHE FGYYGHVINPVNENSNTNTQYTSNVPAGGNYYQENGIHTSGYNSKLSFNIASSYKDRLYF EEEECCEECCCCCCCCCCCEEECCCCCCCCEECCCCEEECCCCCEEEEEECCCCCCEEEE GANLNVHVTDYRRSSSFYEDNSNPLQPTATISNLRFNNELYTYGNGFSFQLGAIAKVTEA CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCEEEECCHHHHHHHH FRLGLAYESNTWYSLYDEVSQSLGTTRQATGGPEIFENINPNVVNVYESYTLQTPGKFTF HHEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEEEEEEECCCCCEEE SGAYVFGKSGLISLDYSIKDYSNTKFKPTNDAGFRGVNNDISNQLTTAGELRVGAEYKIK EEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEECCCEEEE QLSLRGGYRFEGSPYKNGTTIGDLNSYSGGLGYSFGSTKLDLAYSYLERKSNQGFFTTGL EEEECCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC TDGANITSKLNNVTLTLLFEL CCCCCHHHHCCCEEEEEEEEC >Mature Secondary Structure MKKILFLFITGLTVSVSYSQEVSDAVRYAQDNLTGTARFRAMSGAFGAVGGDLSAITVNP CCEEEEEEEECEEEEEECHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEEECC AGSAVFNNNQVGVSFSNQNIKNNSNYFGTQTSDKENSFILNQAGAVFVFKDHNPNNGWNK CCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCE IAIGASYENTNNFDNNVFSAGTNPTNSIGSYFVNFANGIELGNITGIPYRDQFYNEQQAY EEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHCCCCHHE FGYYGHVINPVNENSNTNTQYTSNVPAGGNYYQENGIHTSGYNSKLSFNIASSYKDRLYF EEEECCEECCCCCCCCCCCEEECCCCCCCCEECCCCEEECCCCCEEEEEECCCCCCEEEE GANLNVHVTDYRRSSSFYEDNSNPLQPTATISNLRFNNELYTYGNGFSFQLGAIAKVTEA CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCEEEECCHHHHHHHH FRLGLAYESNTWYSLYDEVSQSLGTTRQATGGPEIFENINPNVVNVYESYTLQTPGKFTF HHEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEEEEEEECCCCCEEE SGAYVFGKSGLISLDYSIKDYSNTKFKPTNDAGFRGVNNDISNQLTTAGELRVGAEYKIK EEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEECCCEEEE QLSLRGGYRFEGSPYKNGTTIGDLNSYSGGLGYSFGSTKLDLAYSYLERKSNQGFFTTGL EEEECCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC TDGANITSKLNNVTLTLLFEL CCCCCHHHHCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA