BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

Click here to switch to the map view.

The map label for this gene is ykvO [H]

Identifier: 146302653

GI number: 146302653

Start: 5945673

End: 5946425

Strand: Reverse

Name: ykvO [H]

Synonym: Fjoh_4926

Alternate gene names: 146302653

Gene position: 5946425-5945673 (Counterclockwise)

Preceding gene: 146302655

Following gene: 146302652

Centisome position: 97.53

GC content: 34.66

Gene sequence:

>753_bases
ATGAAAAATTTAGAAAACAAAGTAGCTATTGTAACAGGTGGAAATAGTGGAATTGGGTACGCTGCTGCTGCCGAATTAGC
ATCAAAAGGTGCAAAAGTAATTGTAACAGGAAGAAACAAAGAAGCTTTGGCAAAAGCTGAAACTGAATTAAATGTTACCG
GAATTGTGGCAGATCAATCTGATTTAAAATCTATTGACAATTTAGTAGAAGAAGTAAAAGCAAAATTCGGGAAAGTTGAT
ATTTTATTCCTGAATGCAGGAATTGCTGCTTTTGCTCCGGTAGACTCAGCTTCAGAAGAACATTATGACAGTATAATGAA
TGTAAACGTAAAAGGAGTTTATTTTACAGTTCAAAAAGTACTGCCAATTTTAAATGACGGAGGTTCTATTATTTTTAATA
CTTCTGTAAATGCTCAATTAGGAATGCCGGGTTCAAGTGTATATGGAGCAAGTAAAGCAGCAGTTTTATCATTAAACAGA
ATATTTGCTGCCGAATTAGCTTCAAGAAAAATCAGAGTTAATGCAGTTTCTCCTGGCCCAATCGAAACTCCTTTGTATGG
TAAAGTAGGTTTAGAAAAAGAAGAAGTAGAAGGTTTAGGAGCAGCTTTGGGAGAAAAAATCTTATTGAAACGTTTTGGTC
AGGCTTCTGAAGTTGCAAAAACAATTAGTTTTCTTGCTTCTGATGATTCATCATTCATTACAGGAACAGAAATTGTTGTC
GACGGCGGACTTACTGTAAATACAGTATTATAA

Upstream 100 bases:

>100_bases
TTAACTAAAAATTAACAACAATAATAACGGAACGATCGTTCCGTTATTATATCTTTGTACCATAATAATTGAATAATCAA
TAACTTAAATAACAAATAAA

Downstream 100 bases:

>100_bases
TTTTTTTTGACTTATTCAGGAACGATTGTTCCGTATTTGTAATATCTTTGTAAAGAATTTAATTTGAATATCATGGCTAG
AACGAAAGAATTTAATGAAG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKNLENKVAIVTGGNSGIGYAAAAELASKGAKVIVTGRNKEALAKAETELNVTGIVADQSDLKSIDNLVEEVKAKFGKVD
ILFLNAGIAAFAPVDSASEEHYDSIMNVNVKGVYFTVQKVLPILNDGGSIIFNTSVNAQLGMPGSSVYGASKAAVLSLNR
IFAAELASRKIRVNAVSPGPIETPLYGKVGLEKEEVEGLGAALGEKILLKRFGQASEVAKTISFLASDDSSFITGTEIVV
DGGLTVNTVL

Sequences:

>Translated_250_residues
MKNLENKVAIVTGGNSGIGYAAAAELASKGAKVIVTGRNKEALAKAETELNVTGIVADQSDLKSIDNLVEEVKAKFGKVD
ILFLNAGIAAFAPVDSASEEHYDSIMNVNVKGVYFTVQKVLPILNDGGSIIFNTSVNAQLGMPGSSVYGASKAAVLSLNR
IFAAELASRKIRVNAVSPGPIETPLYGKVGLEKEEVEGLGAALGEKILLKRFGQASEVAKTISFLASDDSSFITGTEIVV
DGGLTVNTVL
>Mature_250_residues
MKNLENKVAIVTGGNSGIGYAAAAELASKGAKVIVTGRNKEALAKAETELNVTGIVADQSDLKSIDNLVEEVKAKFGKVD
ILFLNAGIAAFAPVDSASEEHYDSIMNVNVKGVYFTVQKVLPILNDGGSIIFNTSVNAQLGMPGSSVYGASKAAVLSLNR
IFAAELASRKIRVNAVSPGPIETPLYGKVGLEKEEVEGLGAALGEKILLKRFGQASEVAKTISFLASDDSSFITGTEIVV
DGGLTVNTVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=36.6935483870968, Blast_Score=144, Evalue=7e-35,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=35.7142857142857, Blast_Score=139, Evalue=2e-33,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=36.9918699186992, Blast_Score=131, Evalue=7e-31,
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=32.4324324324324, Blast_Score=118, Evalue=4e-27,
Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=34, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=33.7209302325581, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=34.6938775510204, Blast_Score=110, Evalue=8e-25,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=38.5026737967914, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=31.496062992126, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=37.0165745856354, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=30.3964757709251, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI4503817, Length=187, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=30.2564102564103, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI157739938, Length=192, Percent_Identity=27.6041666666667, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI223718074, Length=206, Percent_Identity=31.0679611650485, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI31542939, Length=224, Percent_Identity=30.8035714285714, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4758504, Length=264, Percent_Identity=28.030303030303, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI4503301, Length=255, Percent_Identity=29.8039215686275, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI142976729, Length=255, Percent_Identity=23.921568627451, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI109715829, Length=198, Percent_Identity=29.7979797979798, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI209862901, Length=235, Percent_Identity=28.5106382978723, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI19923983, Length=235, Percent_Identity=28.5106382978723, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI7657478, Length=191, Percent_Identity=29.3193717277487, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=33.984375, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=35.3658536585366, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=32.5301204819277, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=33.6, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=29.5081967213115, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790717, Length=253, Percent_Identity=30.8300395256917, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=31.3725490196078, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI2367175, Length=257, Percent_Identity=31.9066147859922, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=30.5084745762712, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=31.9838056680162, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1786701, Length=181, Percent_Identity=29.2817679558011, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787526, Length=191, Percent_Identity=29.8429319371728, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=28.4046692607004, Blast_Score=78, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=36.3636363636364, Blast_Score=132, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=36.4372469635627, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=36.9811320754717, Blast_Score=127, Evalue=7e-30,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=35.2272727272727, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=36.4, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=33.0677290836653, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=36.0902255639098, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=35.2226720647773, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17560676, Length=256, Percent_Identity=30.859375, Blast_Score=113, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=32.4528301886792, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=34.3396226415094, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=34.2105263157895, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=32.824427480916, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=35.6877323420074, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17560332, Length=272, Percent_Identity=35.6617647058824, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=35.4716981132075, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17560220, Length=275, Percent_Identity=33.0909090909091, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=33.5820895522388, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17538480, Length=259, Percent_Identity=34.3629343629344, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=32.1969696969697, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17544670, Length=260, Percent_Identity=30.7692307692308, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=32.6996197718631, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=33.9622641509434, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=31.0756972111554, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=32.0754716981132, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=33.0677290836653, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=30.9803921568627, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17564282, Length=198, Percent_Identity=30.8080808080808, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=260, Percent_Identity=27.3076923076923, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=194, Percent_Identity=28.8659793814433, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=184, Percent_Identity=28.804347826087, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=252, Percent_Identity=32.1428571428571, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=29.1005291005291, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=188, Percent_Identity=31.3829787234043, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=199, Percent_Identity=26.6331658291457, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17570069, Length=184, Percent_Identity=28.2608695652174, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17555612, Length=213, Percent_Identity=29.1079812206573, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=31.3953488372093, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6322227, Length=234, Percent_Identity=30.3418803418803, Blast_Score=75, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=29.0322580645161, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=27.7486910994764, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=36, Blast_Score=141, Evalue=3e-34,
Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=36.71875, Blast_Score=141, Evalue=4e-34,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=35.8565737051793, Blast_Score=141, Evalue=4e-34,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=36.144578313253, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=37.5494071146245, Blast_Score=134, Evalue=7e-32,
Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=35.3413654618474, Blast_Score=132, Evalue=2e-31,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=34.8, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI21358495, Length=229, Percent_Identity=31.4410480349345, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24644337, Length=195, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=29.064039408867, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17737361, Length=266, Percent_Identity=28.1954887218045, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21356301, Length=206, Percent_Identity=28.6407766990291, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24581726, Length=201, Percent_Identity=29.3532338308458, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007238, Length=189, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281364892, Length=179, Percent_Identity=27.3743016759777, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24641388, Length=209, Percent_Identity=27.7511961722488, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24647931, Length=218, Percent_Identity=25.2293577981651, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=28.3236994219653, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24647946, Length=207, Percent_Identity=28.9855072463768, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24641232, Length=201, Percent_Identity=25.3731343283582, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24663911, Length=201, Percent_Identity=27.363184079602, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI45553409, Length=207, Percent_Identity=28.9855072463768, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24647948, Length=207, Percent_Identity=28.9855072463768, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI281364494, Length=205, Percent_Identity=24.8780487804878, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24648693, Length=203, Percent_Identity=27.0935960591133, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI21355889, Length=203, Percent_Identity=27.0935960591133, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI18859837, Length=187, Percent_Identity=28.8770053475936, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26017; Mature: 26017

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLENKVAIVTGGNSGIGYAAAAELASKGAKVIVTGRNKEALAKAETELNVTGIVADQS
CCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHCCCEEEEEEEECHH
DLKSIDNLVEEVKAKFGKVDILFLNAGIAAFAPVDSASEEHYDSIMNVNVKGVYFTVQKV
HHHHHHHHHHHHHHHHCCEEEEEEECCEEEECCCCCCCHHHHHHHHEEEEEEEEEEHHHH
LPILNDGGSIIFNTSVNAQLGMPGSSVYGASKAAVLSLNRIFAAELASRKIRVNAVSPGP
HHHHCCCCCEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
IETPLYGKVGLEKEEVEGLGAALGEKILLKRFGQASEVAKTISFLASDDSSFITGTEIVV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECEEEEE
DGGLTVNTVL
ECCEEEEEEC
>Mature Secondary Structure
MKNLENKVAIVTGGNSGIGYAAAAELASKGAKVIVTGRNKEALAKAETELNVTGIVADQS
CCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHCCCEEEEEEEECHH
DLKSIDNLVEEVKAKFGKVDILFLNAGIAAFAPVDSASEEHYDSIMNVNVKGVYFTVQKV
HHHHHHHHHHHHHHHHCCEEEEEEECCEEEECCCCCCCHHHHHHHHEEEEEEEEEEHHHH
LPILNDGGSIIFNTSVNAQLGMPGSSVYGASKAAVLSLNRIFAAELASRKIRVNAVSPGP
HHHHCCCCCEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
IETPLYGKVGLEKEEVEGLGAALGEKILLKRFGQASEVAKTISFLASDDSSFITGTEIVV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECEEEEE
DGGLTVNTVL
ECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]