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The map label for this gene is yezE [H]

Identifier: 146302652

GI number: 146302652

Start: 5945019

End: 5945600

Strand: Reverse

Name: yezE [H]

Synonym: Fjoh_4925

Alternate gene names: 146302652

Gene position: 5945600-5945019 (Counterclockwise)

Preceding gene: 146302653

Following gene: 146302643

Centisome position: 97.52

GC content: 34.02

Gene sequence:

>582_bases
ATGGCTAGAACGAAAGAATTTAATGAAGATCAGGTTTTAGATAAAGCAATTGAAATTTTTTGGCACAAAGGTTATAACGG
AACTTCTGCTCAGGATTTGGTAAATCATTTAGGATTAAGCCGTTCGAGTTTGTATGATACTTTTGGAGATAAACAGAAAC
TGTTTGCCAGAGCTTTAAAAAAATATCATGATGAAAATTACATTAAGATTAAAGAAATACTCGAAACGGCCACAAATATA
AAAGAAACACTTAGCGTAATTTTTAAGCTGGCTGTAGTAGAAAGTCTCGAAGACCGAATTACTAAAGGTTGTTTTATGGT
AAATTCAGCTGTAGAACTTGCTATGCATGATGCTGATATCGCAAAAATTGTAAACGATAACCGAAAAATCATGGAAGAAG
TTTTTTATATGGCTGTAAAAAAAGGGCAGGAGCTGGGACAGATTTCGTCTAAGCAAGAAGCCAGATCTTTAGCTCGTTTT
ATTTTTAACAATTACTCCGGAATAAGGGTTTTGGCGAGAGCAGGCGAGAGAGACAAACAAGTTTATGATGATATTTTAAA
ATCGATTTTCGCATTGTTTTAG

Upstream 100 bases:

>100_bases
CGGACTTACTGTAAATACAGTATTATAATTTTTTTTGACTTATTCAGGAACGATTGTTCCGTATTTGTAATATCTTTGTA
AAGAATTTAATTTGAATATC

Downstream 100 bases:

>100_bases
AAAATCAATTTCAATAAAAAACGGCAGTTACATTTGTAACTGCCGTTTTTTGTTTTAAGTAAGTAATAGAAAATGAAAAC
TTCTTAGCTTTTTTCTTCTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MARTKEFNEDQVLDKAIEIFWHKGYNGTSAQDLVNHLGLSRSSLYDTFGDKQKLFARALKKYHDENYIKIKEILETATNI
KETLSVIFKLAVVESLEDRITKGCFMVNSAVELAMHDADIAKIVNDNRKIMEEVFYMAVKKGQELGQISSKQEARSLARF
IFNNYSGIRVLARAGERDKQVYDDILKSIFALF

Sequences:

>Translated_193_residues
MARTKEFNEDQVLDKAIEIFWHKGYNGTSAQDLVNHLGLSRSSLYDTFGDKQKLFARALKKYHDENYIKIKEILETATNI
KETLSVIFKLAVVESLEDRITKGCFMVNSAVELAMHDADIAKIVNDNRKIMEEVFYMAVKKGQELGQISSKQEARSLARF
IFNNYSGIRVLARAGERDKQVYDDILKSIFALF
>Mature_192_residues
ARTKEFNEDQVLDKAIEIFWHKGYNGTSAQDLVNHLGLSRSSLYDTFGDKQKLFARALKKYHDENYIKIKEILETATNIK
ETLSVIFKLAVVESLEDRITKGCFMVNSAVELAMHDADIAKIVNDNRKIMEEVFYMAVKKGQELGQISSKQEARSLARFI
FNNYSGIRVLARAGERDKQVYDDILKSIFALF

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=174, Percent_Identity=29.8850574712644, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87082397, Length=180, Percent_Identity=24.4444444444444, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22140; Mature: 22008

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTKEFNEDQVLDKAIEIFWHKGYNGTSAQDLVNHLGLSRSSLYDTFGDKQKLFARALK
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH
KYHDENYIKIKEILETATNIKETLSVIFKLAVVESLEDRITKGCFMVNSAVELAMHDADI
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKIVNDNRKIMEEVFYMAVKKGQELGQISSKQEARSLARFIFNNYSGIRVLARAGERDKQ
HHHHCCCHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHH
VYDDILKSIFALF
HHHHHHHHHHHHC
>Mature Secondary Structure 
ARTKEFNEDQVLDKAIEIFWHKGYNGTSAQDLVNHLGLSRSSLYDTFGDKQKLFARALK
CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH
KYHDENYIKIKEILETATNIKETLSVIFKLAVVESLEDRITKGCFMVNSAVELAMHDADI
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKIVNDNRKIMEEVFYMAVKKGQELGQISSKQEARSLARFIFNNYSGIRVLARAGERDKQ
HHHHCCCHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHH
VYDDILKSIFALF
HHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]