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The map label for this gene is ybbC [H]

Identifier: 146302543

GI number: 146302543

Start: 5828726

End: 5829925

Strand: Direct

Name: ybbC [H]

Synonym: Fjoh_4816

Alternate gene names: 146302543

Gene position: 5828726-5829925 (Clockwise)

Preceding gene: 146302542

Following gene: 146302544

Centisome position: 95.6

GC content: 35.67

Gene sequence:

>1200_bases
ATGATAAAATTCATAGCAAAAAGTGTTCTTATTGTAACTTCTTTCATATTTACATCTTCTTATTCTAATTCGTTTTCAGC
AGTTGCAAAAAATAACACATCAGAAACAAATCCGCCCGCAATAAAAACCGGAGCTGATAATTACGAGAAATATTTACCGC
TTTTAAAGAATAAAAAAATAGGAATTGTAACCAATCAAACCGGAATTTTGTCTGACAAAACCCATTTGGTAGATTTTTTA
TTAGAGAAAAAAATTGCAGTACAAACCATTTTTGCTCCTGAACACGGATTTAGAGGAACTGCCGATGCAGGTGAACATAT
TGTTGACGGAAAAGATCCTAAAACCGGTTTATCTATCATTTCTCTTTATGGAGATAATAAAAAACCAAAACCTGAACAGT
TAGCCGGAATCGATATTATGATTTTCGATTTACAGGATGTCGGCGCCCGTTTTTACACTTATATTTCTTCTTTGCATTAT
GTAATGGAAGCCTGCGCCGAAAACAATGTACCGCTTATAATTCTGGACCGCCCAAATCCAAACGGAAGTATTGTTGACGG
TCCGCTTTTAGAAAAAGAATTTACCAGTTTTGTAGGCATGCACCCTATTCCGGTACTTCACGGAATGACGATTGGCGAAT
ATGCACAAATGGTAAACGGCCAAAAATGGCTGAAAAATGGTGCGCAATGTAAACTGACAGTAATTCCGTGTGTGAATTAC
AAACGAACAATGCCATATAGTTTATTGGTAAAACCATCTCCAAACCTTCCAAACGATCAATCCATAAATTTATATGCAAG
TTTGTGTCTTTTTGAAGGAACGAATGTAAGCATGGGACGCGGCACTGAAAAACAATTTCAAATTTACGGTTCACCTTACT
TAACAAAAACCAATTTCAGCTTTACGCCAAAACCAAATTTTGGTGCTAAAGATCCTCTTTATAATGGAAAAGAATGTTTT
GGCGAAGATTTAACCTCTTATCCTAAACTAACCCAATTAGAATTAAAATGGCTCATTAAAGCCTATCAAAATACCAGCGA
TAAAACGAAATTTTTTAATGCTTTTTTTACCAAACTTGCCGGAACCAAAAAACTGCAGCAGCAAATTGAATCGGGAGTTT
CAGAAAAAGACATTCGCGCAGGCTGGAAAAAAGACCTGGAAGCTTTTCTAATCATGAGAAAACCTTATCTGCTCTATTAA

Upstream 100 bases:

>100_bases
CTACAAACCACACGACAACAATCAAAAAACATCAAAAGCAATCAAATAATAATCTAATTTTATTTAGTCAATTTTTGTCT
TAACTATAACTGTAATAAAA

Downstream 100 bases:

>100_bases
GCACAGCTTTTAAAATCTCCCCAAATCATTACAAACCGACTACTTTACACAAAAGTAGAGGAACCTCATACAAAATATCG
AAATCATAAATATCAAAATC

Product: hypothetical protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MIKFIAKSVLIVTSFIFTSSYSNSFSAVAKNNTSETNPPAIKTGADNYEKYLPLLKNKKIGIVTNQTGILSDKTHLVDFL
LEKKIAVQTIFAPEHGFRGTADAGEHIVDGKDPKTGLSIISLYGDNKKPKPEQLAGIDIMIFDLQDVGARFYTYISSLHY
VMEACAENNVPLIILDRPNPNGSIVDGPLLEKEFTSFVGMHPIPVLHGMTIGEYAQMVNGQKWLKNGAQCKLTVIPCVNY
KRTMPYSLLVKPSPNLPNDQSINLYASLCLFEGTNVSMGRGTEKQFQIYGSPYLTKTNFSFTPKPNFGAKDPLYNGKECF
GEDLTSYPKLTQLELKWLIKAYQNTSDKTKFFNAFFTKLAGTKKLQQQIESGVSEKDIRAGWKKDLEAFLIMRKPYLLY

Sequences:

>Translated_399_residues
MIKFIAKSVLIVTSFIFTSSYSNSFSAVAKNNTSETNPPAIKTGADNYEKYLPLLKNKKIGIVTNQTGILSDKTHLVDFL
LEKKIAVQTIFAPEHGFRGTADAGEHIVDGKDPKTGLSIISLYGDNKKPKPEQLAGIDIMIFDLQDVGARFYTYISSLHY
VMEACAENNVPLIILDRPNPNGSIVDGPLLEKEFTSFVGMHPIPVLHGMTIGEYAQMVNGQKWLKNGAQCKLTVIPCVNY
KRTMPYSLLVKPSPNLPNDQSINLYASLCLFEGTNVSMGRGTEKQFQIYGSPYLTKTNFSFTPKPNFGAKDPLYNGKECF
GEDLTSYPKLTQLELKWLIKAYQNTSDKTKFFNAFFTKLAGTKKLQQQIESGVSEKDIRAGWKKDLEAFLIMRKPYLLY
>Mature_399_residues
MIKFIAKSVLIVTSFIFTSSYSNSFSAVAKNNTSETNPPAIKTGADNYEKYLPLLKNKKIGIVTNQTGILSDKTHLVDFL
LEKKIAVQTIFAPEHGFRGTADAGEHIVDGKDPKTGLSIISLYGDNKKPKPEQLAGIDIMIFDLQDVGARFYTYISSLHY
VMEACAENNVPLIILDRPNPNGSIVDGPLLEKEFTSFVGMHPIPVLHGMTIGEYAQMVNGQKWLKNGAQCKLTVIPCVNY
KRTMPYSLLVKPSPNLPNDQSINLYASLCLFEGTNVSMGRGTEKQFQIYGSPYLTKTNFSFTPKPNFGAKDPLYNGKECF
GEDLTSYPKLTQLELKWLIKAYQNTSDKTKFFNAFFTKLAGTKKLQQQIESGVSEKDIRAGWKKDLEAFLIMRKPYLLY

Specific function: Unknown

COG id: COG3876

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008302 [H]

Pfam domain/function: PF07075 DUF1343 [H]

EC number: NA

Molecular weight: Translated: 44613; Mature: 44613

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKFIAKSVLIVTSFIFTSSYSNSFSAVAKNNTSETNPPAIKTGADNYEKYLPLLKNKKI
CHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCHHHHHHHHCCCCE
GIVTNQTGILSDKTHLVDFLLEKKIAVQTIFAPEHGFRGTADAGEHIVDGKDPKTGLSII
EEEECCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
SLYGDNKKPKPEQLAGIDIMIFDLQDVGARFYTYISSLHYVMEACAENNVPLIILDRPNP
EEECCCCCCCHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
NGSIVDGPLLEKEFTSFVGMHPIPVLHGMTIGEYAQMVNGQKWLKNGAQCKLTVIPCVNY
CCCCCCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHCCHHHHCCCCEEEEEEEECCCC
KRTMPYSLLVKPSPNLPNDQSINLYASLCLFEGTNVSMGRGTEKQFQIYGSPYLTKTNFS
CCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEECCCE
FTPKPNFGAKDPLYNGKECFGEDLTSYPKLTQLELKWLIKAYQNTSDKTKFFNAFFTKLA
ECCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
GTKKLQQQIESGVSEKDIRAGWKKDLEAFLIMRKPYLLY
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIKFIAKSVLIVTSFIFTSSYSNSFSAVAKNNTSETNPPAIKTGADNYEKYLPLLKNKKI
CHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCHHHHHHHHCCCCE
GIVTNQTGILSDKTHLVDFLLEKKIAVQTIFAPEHGFRGTADAGEHIVDGKDPKTGLSII
EEEECCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
SLYGDNKKPKPEQLAGIDIMIFDLQDVGARFYTYISSLHYVMEACAENNVPLIILDRPNP
EEECCCCCCCHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
NGSIVDGPLLEKEFTSFVGMHPIPVLHGMTIGEYAQMVNGQKWLKNGAQCKLTVIPCVNY
CCCCCCCCCHHHHHHHHHCCCCCHHHHCCCHHHHHHHHCCHHHHCCCCEEEEEEEECCCC
KRTMPYSLLVKPSPNLPNDQSINLYASLCLFEGTNVSMGRGTEKQFQIYGSPYLTKTNFS
CCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEECCCE
FTPKPNFGAKDPLYNGKECFGEDLTSYPKLTQLELKWLIKAYQNTSDKTKFFNAFFTKLA
ECCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
GTKKLQQQIESGVSEKDIRAGWKKDLEAFLIMRKPYLLY
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]