| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146302467
Identifier: 146302467
GI number: 146302467
Start: 5729059
End: 5731977
Strand: Reverse
Name: 146302467
Synonym: Fjoh_4740
Alternate gene names: NA
Gene position: 5731977-5729059 (Counterclockwise)
Preceding gene: 146302468
Following gene: 146302461
Centisome position: 94.02
GC content: 25.52
Gene sequence:
>2919_bases ATGAGTAATAGAGGTTCAGAATGGAGAAAATGGAATTTTCATGTTCATACTAAGGGAACAAATAAAAATGATCAGTTTAC TTCTGGAAGTATGGATGATTTTTTTTGTACATTTTTTAAAAAGGCATATGAAGATAAAATTGAGGCTATAGGAATAACTG ATTATTTTTCAATAGATAGATATTTAGATGCAATTAATTATGTCAAAGAAATACATACTAAAGAAGATGAAGATTGGGAG GAAAAACTTTTTTCTGAGGATGAAATAAATTTTATCCGAAAGATATTTATTTTCCCAAATGTAGAACTTCGAATTTCCCC AACTACAAAAAAAGGAAAGTTTATAAACTTACATTTTATATTTGATCCAAAGATTGTTGAAAATTTGAATAATGAATTTT TTAACAAGATTAGTAATGTTGAGAATTATTTAATGAATTATCAAGGTATAAAGGATTATGCTAAGCATATAAATCCTTTA TTAAATGATGATCAACTTTATAAGTTTGGGATTGATAATTATAATATAGAGTTTGGGAGTATCAAATCTTTATTGGAATC AAACAAATTAATTAGAGATAATTCGCTTATTGCAGTTAGTAGTAAATCGAATGATGGAGTTTCGGGGTTAAAAGATTATT ATGAAGAATTTGAAAAAGAAGGAGGAAGTCTTCTTGGAACTGTTAAATCAATTTATAAATTAACCAATATTGTATTCTCC AATGCTCCTTCTGATAAGGAATATTTTTTAGGAAAAAAAACTTCAGAACAAGAAGTAATAAGTCATACAGGATCTTTAAA ACCATGTATAATCGGATGTGATTCTCATAGCGAAGATACTTTATTTAGTAGATTTACATGGGTAAAATCAGATTTAACTT TTGAAGGATTAAGGCAAATATGTTACGAACCTGAACAAAGAGTTAAAATACAAAATGATAAACCGGATTTTAAGGAAGAT AAAGTAATAATCAATAAGGTTCAATTTATATCAGAGAATAAAGTCTTTACCAATAAAGAAATTTATTTGAATCCAAATTT AAATGTTATAATAGGTGGTAAATCTTCAGGTAAATCAATTTTTCTTTATTCTATGGCAAAAACATTATTAGTTGATGACA CTATTTTGAAAAATGAAAATTTAGAAGAAAAATACAATTTGAGATCTATTGATTCGGACTTTAATTTTAGAATTACAACG AATTCAGGAATTTCACAAGAAATGTTTCGCAGTTTGGACGAGAATTCCGTAATTCCAGATATTAAATATATTCCACAAAA TTATTTGGTAAAATTAGCCGAACCGGATATAAATAAAAAAGGAAAATCTTTAAATAAATTAGTGCGTGATTTAATTAAAG AAGATCAAGATTCAAAAGACAAATATGATCAGTTTATTAGGAATGTAAAGCAAAATGATAAAGAGAGAGATGATTTGCTA AGTAAATATTTTGAACTTTTAGAAGAAATAGCAAAAACTGAATCTGAATTGAAAACCAAGTCAAATAAAGAAGTTCTTGA AAAAAACATTAAATCGAATACTGAGAGTGTCGAAAAATTAAATAAAGAATCAGGTTTAAGTGATCAAGAAATTTTAAAGT ATAAAGAAATTCAAACGAAGTTAGAGTTTAATACTATTCAGAAAAATAATTTTAACGATGATTTTAACAATATTAATGCT GGTTTATCTGATTTAAAAAAGCTTTCAAATGATATTTTAGAGAAGAAAAAAGAATTTGTAGAAAAAATTAAAACAGAAAG TGTTAAACAATATTATGTCGATAAATTATCATTTATTGATAAAATTTATTTAGATATCACAAAAATATTTGAAGAGATTG AAATTCAGACTGATGAAGCAGGAAAGAGGTCTTTTAAAAATGAAAATCTTTTAAAAAAGAATTTAATTTCTATAAATGGA GAAAAAGCAACTTTAACAAAAGAATTAGAGCCATATCAGCAAAATGAAAAATTGAAAAAGCAGATTGAAGTTTTAAATCA ATCAATTATAGATGATAAAAAACTATTGGCTGATATTGATTTATTAAATAAAGCGATATTGGATAAAAAATCGCTCAGTG AAAATTGCAGACAAGATATATTTAAACTATTTAGAGAAAACTTTGAAGAATATAATAAGATTATAAACGAACTTAAGCAT AGAACTTTAGAACTAGAAGGTGACGGATTAAAAATAGATGGTATAGCACAGTTTAATTTTCCAAAATTTGTTAAAAATTT GTATGAAGTTAGTGACGGTAGAAAAGCGTCATATAATAATTATACAATTTTAAAGGAAACTCATAAAGCTACTTCACCAA CAAATTTTGAAGAAATTATTAACGAAATTGAAAAAATATTTATTGACATAATTAATGGTGATTATTTTATTTTAGCAAAG TTTGGTAAAATGCAAGCCGTAAAAGAATTGCTGGATGATTATTTCTTTGATTATTGGAAAATAACTTATAAAGAGGACAA ATTAGGAGAGATGTCTACAGGAAAAGCGAGTTTTGTGATCTTAATGTTAATAATTGGTTTAAGTAAATCAAAAGCGCCTA TTTTGATTGATCAACCAGAAGATAATTTAGATAATAGATCGATAACTTTGGATTTAGTTTCTTATTTAAAGAATAAAAAA TTGGAAAGACAAATTATCATTGTTACTCATAACGCAAATATAGTTGTTAATTCAGATGCTGAAAATGTTATTGTGGCAAA TCAGAAAGGACAGAATGAGATTGATAGTTCCAGTAATTTTAAATTTGATTTGATAAATGGTTCAATTGAAAATACTTTTG AGAAAATATTAGAAGAAACAGATATTTTAAGAAGTATGGGAATTAGGGAGCATATTGCGGATATCGTTGAAGGAGGAAAA GAAGCTTTTAAAAAGCGAGAAGAAAAATACGGATTTTAA
Upstream 100 bases:
>100_bases TGGAAAACCGTAAAATATCTTCTAAAAATTTTTGCATTTTTGATTACTAGATTTTTTAACAGAAAATAAAGCTAACTAAC CAACATAAACCAAAATAATT
Downstream 100 bases:
>100_bases GAAAAACAAAAAAAGCGCAAAACTTATGATTTGCGCTTTTTTCAATTCTATATATAAAAAGAAAAATCCTTATTTCAATT TCATCAATTTTTCTAAATAT
Product: hypothetical protein
Products: NA
Alternate protein names: ABC Transporter; SMC Domain-Containing Protein; DNA Repair ATPase; SMC Domain Protein; ATPase; Phosphotransferase Domain-Containing Protein; PHP-Like; Phosphoesterase PHP Domain Protein; PHP N-Terminal Domain Protein
Number of amino acids: Translated: 972; Mature: 971
Protein sequence:
>972_residues MSNRGSEWRKWNFHVHTKGTNKNDQFTSGSMDDFFCTFFKKAYEDKIEAIGITDYFSIDRYLDAINYVKEIHTKEDEDWE EKLFSEDEINFIRKIFIFPNVELRISPTTKKGKFINLHFIFDPKIVENLNNEFFNKISNVENYLMNYQGIKDYAKHINPL LNDDQLYKFGIDNYNIEFGSIKSLLESNKLIRDNSLIAVSSKSNDGVSGLKDYYEEFEKEGGSLLGTVKSIYKLTNIVFS NAPSDKEYFLGKKTSEQEVISHTGSLKPCIIGCDSHSEDTLFSRFTWVKSDLTFEGLRQICYEPEQRVKIQNDKPDFKED KVIINKVQFISENKVFTNKEIYLNPNLNVIIGGKSSGKSIFLYSMAKTLLVDDTILKNENLEEKYNLRSIDSDFNFRITT NSGISQEMFRSLDENSVIPDIKYIPQNYLVKLAEPDINKKGKSLNKLVRDLIKEDQDSKDKYDQFIRNVKQNDKERDDLL SKYFELLEEIAKTESELKTKSNKEVLEKNIKSNTESVEKLNKESGLSDQEILKYKEIQTKLEFNTIQKNNFNDDFNNINA GLSDLKKLSNDILEKKKEFVEKIKTESVKQYYVDKLSFIDKIYLDITKIFEEIEIQTDEAGKRSFKNENLLKKNLISING EKATLTKELEPYQQNEKLKKQIEVLNQSIIDDKKLLADIDLLNKAILDKKSLSENCRQDIFKLFRENFEEYNKIINELKH RTLELEGDGLKIDGIAQFNFPKFVKNLYEVSDGRKASYNNYTILKETHKATSPTNFEEIINEIEKIFIDIINGDYFILAK FGKMQAVKELLDDYFFDYWKITYKEDKLGEMSTGKASFVILMLIIGLSKSKAPILIDQPEDNLDNRSITLDLVSYLKNKK LERQIIIVTHNANIVVNSDAENVIVANQKGQNEIDSSSNFKFDLINGSIENTFEKILEETDILRSMGIREHIADIVEGGK EAFKKREEKYGF
Sequences:
>Translated_972_residues MSNRGSEWRKWNFHVHTKGTNKNDQFTSGSMDDFFCTFFKKAYEDKIEAIGITDYFSIDRYLDAINYVKEIHTKEDEDWE EKLFSEDEINFIRKIFIFPNVELRISPTTKKGKFINLHFIFDPKIVENLNNEFFNKISNVENYLMNYQGIKDYAKHINPL LNDDQLYKFGIDNYNIEFGSIKSLLESNKLIRDNSLIAVSSKSNDGVSGLKDYYEEFEKEGGSLLGTVKSIYKLTNIVFS NAPSDKEYFLGKKTSEQEVISHTGSLKPCIIGCDSHSEDTLFSRFTWVKSDLTFEGLRQICYEPEQRVKIQNDKPDFKED KVIINKVQFISENKVFTNKEIYLNPNLNVIIGGKSSGKSIFLYSMAKTLLVDDTILKNENLEEKYNLRSIDSDFNFRITT NSGISQEMFRSLDENSVIPDIKYIPQNYLVKLAEPDINKKGKSLNKLVRDLIKEDQDSKDKYDQFIRNVKQNDKERDDLL SKYFELLEEIAKTESELKTKSNKEVLEKNIKSNTESVEKLNKESGLSDQEILKYKEIQTKLEFNTIQKNNFNDDFNNINA GLSDLKKLSNDILEKKKEFVEKIKTESVKQYYVDKLSFIDKIYLDITKIFEEIEIQTDEAGKRSFKNENLLKKNLISING EKATLTKELEPYQQNEKLKKQIEVLNQSIIDDKKLLADIDLLNKAILDKKSLSENCRQDIFKLFRENFEEYNKIINELKH RTLELEGDGLKIDGIAQFNFPKFVKNLYEVSDGRKASYNNYTILKETHKATSPTNFEEIINEIEKIFIDIINGDYFILAK FGKMQAVKELLDDYFFDYWKITYKEDKLGEMSTGKASFVILMLIIGLSKSKAPILIDQPEDNLDNRSITLDLVSYLKNKK LERQIIIVTHNANIVVNSDAENVIVANQKGQNEIDSSSNFKFDLINGSIENTFEKILEETDILRSMGIREHIADIVEGGK EAFKKREEKYGF >Mature_971_residues SNRGSEWRKWNFHVHTKGTNKNDQFTSGSMDDFFCTFFKKAYEDKIEAIGITDYFSIDRYLDAINYVKEIHTKEDEDWEE KLFSEDEINFIRKIFIFPNVELRISPTTKKGKFINLHFIFDPKIVENLNNEFFNKISNVENYLMNYQGIKDYAKHINPLL NDDQLYKFGIDNYNIEFGSIKSLLESNKLIRDNSLIAVSSKSNDGVSGLKDYYEEFEKEGGSLLGTVKSIYKLTNIVFSN APSDKEYFLGKKTSEQEVISHTGSLKPCIIGCDSHSEDTLFSRFTWVKSDLTFEGLRQICYEPEQRVKIQNDKPDFKEDK VIINKVQFISENKVFTNKEIYLNPNLNVIIGGKSSGKSIFLYSMAKTLLVDDTILKNENLEEKYNLRSIDSDFNFRITTN SGISQEMFRSLDENSVIPDIKYIPQNYLVKLAEPDINKKGKSLNKLVRDLIKEDQDSKDKYDQFIRNVKQNDKERDDLLS KYFELLEEIAKTESELKTKSNKEVLEKNIKSNTESVEKLNKESGLSDQEILKYKEIQTKLEFNTIQKNNFNDDFNNINAG LSDLKKLSNDILEKKKEFVEKIKTESVKQYYVDKLSFIDKIYLDITKIFEEIEIQTDEAGKRSFKNENLLKKNLISINGE KATLTKELEPYQQNEKLKKQIEVLNQSIIDDKKLLADIDLLNKAILDKKSLSENCRQDIFKLFRENFEEYNKIINELKHR TLELEGDGLKIDGIAQFNFPKFVKNLYEVSDGRKASYNNYTILKETHKATSPTNFEEIINEIEKIFIDIINGDYFILAKF GKMQAVKELLDDYFFDYWKITYKEDKLGEMSTGKASFVILMLIIGLSKSKAPILIDQPEDNLDNRSITLDLVSYLKNKKL ERQIIIVTHNANIVVNSDAENVIVANQKGQNEIDSSSNFKFDLINGSIENTFEKILEETDILRSMGIREHIADIVEGGKE AFKKREEKYGF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 113010; Mature: 112879
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNRGSEWRKWNFHVHTKGTNKNDQFTSGSMDDFFCTFFKKAYEDKIEAIGITDYFSIDR CCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCHHHHHHHH YLDAINYVKEIHTKEDEDWEEKLFSEDEINFIRKIFIFPNVELRISPTTKKGKFINLHFI HHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEE FDPKIVENLNNEFFNKISNVENYLMNYQGIKDYAKHINPLLNDDQLYKFGIDNYNIEFGS ECCHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEECCCCCEECHHH IKSLLESNKLIRDNSLIAVSSKSNDGVSGLKDYYEEFEKEGGSLLGTVKSIYKLTNIVFS HHHHHHCCCEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC NAPSDKEYFLGKKTSEQEVISHTGSLKPCIIGCDSHSEDTLFSRFTWVKSDLTFEGLRQI CCCCCCHHHCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH CYEPEQRVKIQNDKPDFKEDKVIINKVQFISENKVFTNKEIYLNPNLNVIIGGKSSGKSI HCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCEEEECCCCEEEECCCCCCCEE FLYSMAKTLLVDDTILKNENLEEKYNLRSIDSDFNFRITTNSGISQEMFRSLDENSVIPD EHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCC IKYIPQNYLVKLAEPDINKKGKSLNKLVRDLIKEDQDSKDKYDQFIRNVKQNDKERDDLL HHHCCHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH SKYFELLEEIAKTESELKTKSNKEVLEKNIKSNTESVEKLNKESGLSDQEILKYKEIQTK HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH LEFNTIQKNNFNDDFNNINAGLSDLKKLSNDILEKKKEFVEKIKTESVKQYYVDKLSFID HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KIYLDITKIFEEIEIQTDEAGKRSFKNENLLKKNLISINGEKATLTKELEPYQQNEKLKK HHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHH QIEVLNQSIIDDKKLLADIDLLNKAILDKKSLSENCRQDIFKLFRENFEEYNKIINELKH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTLELEGDGLKIDGIAQFNFPKFVKNLYEVSDGRKASYNNYTILKETHKATSPTNFEEII HEEEECCCCEEECCEECCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHH NEIEKIFIDIINGDYFILAKFGKMQAVKELLDDYFFDYWKITYKEDKLGEMSTGKASFVI HHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHH LMLIIGLSKSKAPILIDQPEDNLDNRSITLDLVSYLKNKKLERQIIIVTHNANIVVNSDA HHHHHCCCCCCCCEEEECCCCCCCCCEEHHHHHHHHHCCCCCCEEEEEEECCEEEEECCC ENVIVANQKGQNEIDSSSNFKFDLINGSIENTFEKILEETDILRSMGIREHIADIVEGGK CCEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHH EAFKKREEKYGF HHHHHHHHHCCC >Mature Secondary Structure SNRGSEWRKWNFHVHTKGTNKNDQFTSGSMDDFFCTFFKKAYEDKIEAIGITDYFSIDR CCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCHHHHHHHH YLDAINYVKEIHTKEDEDWEEKLFSEDEINFIRKIFIFPNVELRISPTTKKGKFINLHFI HHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEE FDPKIVENLNNEFFNKISNVENYLMNYQGIKDYAKHINPLLNDDQLYKFGIDNYNIEFGS ECCHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEECCCCCEECHHH IKSLLESNKLIRDNSLIAVSSKSNDGVSGLKDYYEEFEKEGGSLLGTVKSIYKLTNIVFS HHHHHHCCCEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC NAPSDKEYFLGKKTSEQEVISHTGSLKPCIIGCDSHSEDTLFSRFTWVKSDLTFEGLRQI CCCCCCHHHCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH CYEPEQRVKIQNDKPDFKEDKVIINKVQFISENKVFTNKEIYLNPNLNVIIGGKSSGKSI HCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCEEEECCCCEEEECCCCCCCEE FLYSMAKTLLVDDTILKNENLEEKYNLRSIDSDFNFRITTNSGISQEMFRSLDENSVIPD EHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCC IKYIPQNYLVKLAEPDINKKGKSLNKLVRDLIKEDQDSKDKYDQFIRNVKQNDKERDDLL HHHCCHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH SKYFELLEEIAKTESELKTKSNKEVLEKNIKSNTESVEKLNKESGLSDQEILKYKEIQTK HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH LEFNTIQKNNFNDDFNNINAGLSDLKKLSNDILEKKKEFVEKIKTESVKQYYVDKLSFID HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KIYLDITKIFEEIEIQTDEAGKRSFKNENLLKKNLISINGEKATLTKELEPYQQNEKLKK HHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHH QIEVLNQSIIDDKKLLADIDLLNKAILDKKSLSENCRQDIFKLFRENFEEYNKIINELKH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTLELEGDGLKIDGIAQFNFPKFVKNLYEVSDGRKASYNNYTILKETHKATSPTNFEEII HEEEECCCCEEECCEECCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHH NEIEKIFIDIINGDYFILAKFGKMQAVKELLDDYFFDYWKITYKEDKLGEMSTGKASFVI HHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHH LMLIIGLSKSKAPILIDQPEDNLDNRSITLDLVSYLKNKKLERQIIIVTHNANIVVNSDA HHHHHCCCCCCCCEEEECCCCCCCCCEEHHHHHHHHHCCCCCCEEEEEEECCEEEEECCC ENVIVANQKGQNEIDSSSNFKFDLINGSIENTFEKILEETDILRSMGIREHIADIVEGGK CCEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHH EAFKKREEKYGF HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA