| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146302456
Identifier: 146302456
GI number: 146302456
Start: 5715288
End: 5716553
Strand: Reverse
Name: 146302456
Synonym: Fjoh_4729
Alternate gene names: NA
Gene position: 5716553-5715288 (Counterclockwise)
Preceding gene: 146302457
Following gene: 146302452
Centisome position: 93.76
GC content: 33.18
Gene sequence:
>1266_bases ATGAAAAGTTGTAAAAATTATTCAGTAAGTAAAATTCTTGTATTTATTTTTTTAATGAATATTTCGTATAAAGGAATCAG CCAGACCATGGTGGGAAGAATTTATGATTATGTAAGACAGCAAAGCTTTGTGCTTTTTGATAATGGATTCATTATACAGA ATGAGAATCCTATGAATAGTGGTTATGTACAACGAGACCCTTCGGGATTTATGTATCTTAGGATACCAGCTGTAAATCCT ATTGATAATGCTTATTTTGTTGCTTGGGATAAAAATATAGTAGAAATTAATCGATATAGGGGCGCTAATATAGTGGGACG TTATGAAGGTTTTGTTCCTGTAAATCCGTATAATACAGTTTACCATACACCCAGTTATAATCAAAATTTTGGAGTTGAGA TTTCACCAGGCAATTTTACTCCAATTCCTGATGGAGTTGTAGATGAAAATAAATCTTTTGGGGATATTATGATTACAAAT GAAGTCAAAGCGCAGGAATGTTATCAAAATGCCTTTTCTCCTTCAACAGGACTTGATAGAGAAAAATTTACTATGTGTAT GATTCAAAATATGGCAGGTAAAAGAGAACTGGATATTTTAAATTGTGTTCGAGATTCTAAAACGCCAGAAGAACAAACTC TTTGTCTATTTGGAAAATTAGGAGGATCTAAAGAAAGAGAAATTGCTCAAAAAATTTCAGAATGCTATGCGAATTATGGA AGTGATTGGAGTAAATATCCATTGTGTATGTCATCTTATGTAAATGATCCAACAGTATCTAAGGTACTAGCCTGTATGGA ACAGCAAAGTAAATCAGGTAATGTTAGTTTTATGGGAACAGCTATGTGCTATGGATTGCAAGAATTTAATATGAATGCAG AAACTCAGATTATATTACAATGTGCTGCAGCTTCGGGAGGAGAACCTTATACTTTTGCCGGATGTGCGGGTGGGCAGTTA CTGGCAAGAGAACTAGACAAATGTTTTACAAATGGTGTTGGTGGTGATAGTGGATGTTTTGGTAAAAATAATGATATTGT AAAAGGGCTTAAAGCAATTGGAGATGCCCTTAATGTAAAATTTGGACCAAATAATGATATTACAAAATTATGGAATAATA CGGTAAGCGATATTACAAATGGCCCAGGTTATAATCATGATGCAGTAAAAACAATAAGAAATATAAGTAATGAAGTTGAT AGAGCTGCTGATAATGTGAGTAAAGCGGTAAGGAAGGCAGTGCCTAAAATTAGAATTAAATGGTAA
Upstream 100 bases:
>100_bases ACTATACATTTGAATCATTAATAAAGACAGTATAGAATAAATCATTTTGCCTTTGAGAGTTTTCAAAAAATACTATTAAG TAAACCTAAAAAACGATATC
Downstream 100 bases:
>100_bases TTTTTAATCAAAAGATGTTTTTAGTATCCATATTACCTGTATTAAAAAAGGCTGTTCAATTGAACAGCCTTTTTCGTTTG GTTATATTATTTTGATTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 421; Mature: 421
Protein sequence:
>421_residues MKSCKNYSVSKILVFIFLMNISYKGISQTMVGRIYDYVRQQSFVLFDNGFIIQNENPMNSGYVQRDPSGFMYLRIPAVNP IDNAYFVAWDKNIVEINRYRGANIVGRYEGFVPVNPYNTVYHTPSYNQNFGVEISPGNFTPIPDGVVDENKSFGDIMITN EVKAQECYQNAFSPSTGLDREKFTMCMIQNMAGKRELDILNCVRDSKTPEEQTLCLFGKLGGSKEREIAQKISECYANYG SDWSKYPLCMSSYVNDPTVSKVLACMEQQSKSGNVSFMGTAMCYGLQEFNMNAETQIILQCAAASGGEPYTFAGCAGGQL LARELDKCFTNGVGGDSGCFGKNNDIVKGLKAIGDALNVKFGPNNDITKLWNNTVSDITNGPGYNHDAVKTIRNISNEVD RAADNVSKAVRKAVPKIRIKW
Sequences:
>Translated_421_residues MKSCKNYSVSKILVFIFLMNISYKGISQTMVGRIYDYVRQQSFVLFDNGFIIQNENPMNSGYVQRDPSGFMYLRIPAVNP IDNAYFVAWDKNIVEINRYRGANIVGRYEGFVPVNPYNTVYHTPSYNQNFGVEISPGNFTPIPDGVVDENKSFGDIMITN EVKAQECYQNAFSPSTGLDREKFTMCMIQNMAGKRELDILNCVRDSKTPEEQTLCLFGKLGGSKEREIAQKISECYANYG SDWSKYPLCMSSYVNDPTVSKVLACMEQQSKSGNVSFMGTAMCYGLQEFNMNAETQIILQCAAASGGEPYTFAGCAGGQL LARELDKCFTNGVGGDSGCFGKNNDIVKGLKAIGDALNVKFGPNNDITKLWNNTVSDITNGPGYNHDAVKTIRNISNEVD RAADNVSKAVRKAVPKIRIKW >Mature_421_residues MKSCKNYSVSKILVFIFLMNISYKGISQTMVGRIYDYVRQQSFVLFDNGFIIQNENPMNSGYVQRDPSGFMYLRIPAVNP IDNAYFVAWDKNIVEINRYRGANIVGRYEGFVPVNPYNTVYHTPSYNQNFGVEISPGNFTPIPDGVVDENKSFGDIMITN EVKAQECYQNAFSPSTGLDREKFTMCMIQNMAGKRELDILNCVRDSKTPEEQTLCLFGKLGGSKEREIAQKISECYANYG SDWSKYPLCMSSYVNDPTVSKVLACMEQQSKSGNVSFMGTAMCYGLQEFNMNAETQIILQCAAASGGEPYTFAGCAGGQL LARELDKCFTNGVGGDSGCFGKNNDIVKGLKAIGDALNVKFGPNNDITKLWNNTVSDITNGPGYNHDAVKTIRNISNEVD RAADNVSKAVRKAVPKIRIKW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46780; Mature: 46780
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSCKNYSVSKILVFIFLMNISYKGISQTMVGRIYDYVRQQSFVLFDNGFIIQNENPMNS CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCC GYVQRDPSGFMYLRIPAVNPIDNAYFVAWDKNIVEINRYRGANIVGRYEGFVPVNPYNTV CCEEECCCCEEEEEECCCCCCCCCEEEEECCCEEEEECCCCCCEEEECCCEEECCCCCCE YHTPSYNQNFGVEISPGNFTPIPDGVVDENKSFGDIMITNEVKAQECYQNAFSPSTGLDR EECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCH EKFTMCMIQNMAGKRELDILNCVRDSKTPEEQTLCLFGKLGGSKEREIAQKISECYANYG HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHHCC SDWSKYPLCMSSYVNDPTVSKVLACMEQQSKSGNVSFMGTAMCYGLQEFNMNAETQIILQ CCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCEEEEEE CAAASGGEPYTFAGCAGGQLLARELDKCFTNGVGGDSGCFGKNNDIVKGLKAIGDALNVK EECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHEEE FGPNNDITKLWNNTVSDITNGPGYNHDAVKTIRNISNEVDRAADNVSKAVRKAVPKIRIK ECCCCCHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC W C >Mature Secondary Structure MKSCKNYSVSKILVFIFLMNISYKGISQTMVGRIYDYVRQQSFVLFDNGFIIQNENPMNS CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCC GYVQRDPSGFMYLRIPAVNPIDNAYFVAWDKNIVEINRYRGANIVGRYEGFVPVNPYNTV CCEEECCCCEEEEEECCCCCCCCCEEEEECCCEEEEECCCCCCEEEECCCEEECCCCCCE YHTPSYNQNFGVEISPGNFTPIPDGVVDENKSFGDIMITNEVKAQECYQNAFSPSTGLDR EECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCH EKFTMCMIQNMAGKRELDILNCVRDSKTPEEQTLCLFGKLGGSKEREIAQKISECYANYG HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHHCC SDWSKYPLCMSSYVNDPTVSKVLACMEQQSKSGNVSFMGTAMCYGLQEFNMNAETQIILQ CCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCEEEEEE CAAASGGEPYTFAGCAGGQLLARELDKCFTNGVGGDSGCFGKNNDIVKGLKAIGDALNVK EECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHEEE FGPNNDITKLWNNTVSDITNGPGYNHDAVKTIRNISNEVDRAADNVSKAVRKAVPKIRIK ECCCCCHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC W C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA