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The map label for this gene is araC [C]

Identifier: 146302419

GI number: 146302419

Start: 5671042

End: 5671956

Strand: Direct

Name: araC [C]

Synonym: Fjoh_4692

Alternate gene names: 146302419

Gene position: 5671042-5671956 (Clockwise)

Preceding gene: 146302418

Following gene: 146302420

Centisome position: 93.02

GC content: 34.32

Gene sequence:

>915_bases
ATGGCAAATCAGCAGCCGCATCGAGTAAAAAGCATAAGCGAATTTCATGAGTTTCGAGATTTGCCAAAACCTGAACACCC
TTTAGTGAGTGTTTATAATTTTGAAGATTTAAAATACCTCAACAAAGAAGAACCCAAAAGTCTTATTCTTGATTTTTATT
CCATTGCATTAAAAAGAAATGCAAATGCCAAAATGCGCTACGGCCAGCAGGAATACGATTTTAAAGAAGGCGTTTTATTA
TTTATTGCTCCGGGTCAGGTTTTTTCTATCGAAGGCAATTCAGAACTGCAGCATACAGGACATTCCCTTTTAATTCATCC
TGATTTTTTATGGAATACACCGCTTGCCCAGAAAATAAAACAATATGAATATTTTGGATATGCAGTTCATGAAGCCCTGC
ATCTTTCTGATAAAGAAGAAAAAATGATTATTGATATCATGAAAAATATTCAGCAGGAATACCGGTCTAACATTGACAAA
TTCAGCCAGGACGTAATTATTGCGCAAATCGAATTATTGCTTACCTATTCTGAACGCTTTTACAACCGCCAGTTTATAAC
CAGAAAAATAAACAATCATGAAATTCTGGCTCGTTTAGAAAAACTGCTCGAAGAATATTTCAACAATGATTCAATTATAA
AAAAAGGAATTCCTACGGTACAGTACATTGCAGAAAATCTAAATGTTTCGCCCAATTATTTAAGCGGACTTTTAAAACAT
CTCACAGGACAGAGCACCCAGCAGCACATTCATAATAAACTCATAGAAAAAGCAAAAGAAAAACTTTCTACAACCAATTT
ATCTGTAAGTGAAATTGCTTTCGAATTAGGTTTCGAGCATCAGCAATCGTTTAGTAAATTATTTAAAACCAAGACAAACG
TTTCGCCTTTAGAGTTCAGGCAGTCTTTCAATTAA

Upstream 100 bases:

>100_bases
TATTTGAAAAACAAACCGGCAGTTTTAGGAAAAACAAAACTGACAGATTATGCAGAAGAATTTGCTGCAATTTATAATTA
AAAAATAAGTAATTTAGGTT

Downstream 100 bases:

>100_bases
AAAATATTTTAAGTAAATGCAATTCATAATTTTCATAAATTCGTAAGAACAAAATAAAAATTATGAACCCCTTTTTAAGA
AATACTCTGGCCGTTACTGT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator; AraC Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcription Regulator; Transcriptional Regulator AraC Type; Bacterial Regulatory Helix-Turn-Helix Protein; Response Regulator Receiver Protein

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MANQQPHRVKSISEFHEFRDLPKPEHPLVSVYNFEDLKYLNKEEPKSLILDFYSIALKRNANAKMRYGQQEYDFKEGVLL
FIAPGQVFSIEGNSELQHTGHSLLIHPDFLWNTPLAQKIKQYEYFGYAVHEALHLSDKEEKMIIDIMKNIQQEYRSNIDK
FSQDVIIAQIELLLTYSERFYNRQFITRKINNHEILARLEKLLEEYFNNDSIIKKGIPTVQYIAENLNVSPNYLSGLLKH
LTGQSTQQHIHNKLIEKAKEKLSTTNLSVSEIAFELGFEHQQSFSKLFKTKTNVSPLEFRQSFN

Sequences:

>Translated_304_residues
MANQQPHRVKSISEFHEFRDLPKPEHPLVSVYNFEDLKYLNKEEPKSLILDFYSIALKRNANAKMRYGQQEYDFKEGVLL
FIAPGQVFSIEGNSELQHTGHSLLIHPDFLWNTPLAQKIKQYEYFGYAVHEALHLSDKEEKMIIDIMKNIQQEYRSNIDK
FSQDVIIAQIELLLTYSERFYNRQFITRKINNHEILARLEKLLEEYFNNDSIIKKGIPTVQYIAENLNVSPNYLSGLLKH
LTGQSTQQHIHNKLIEKAKEKLSTTNLSVSEIAFELGFEHQQSFSKLFKTKTNVSPLEFRQSFN
>Mature_303_residues
ANQQPHRVKSISEFHEFRDLPKPEHPLVSVYNFEDLKYLNKEEPKSLILDFYSIALKRNANAKMRYGQQEYDFKEGVLLF
IAPGQVFSIEGNSELQHTGHSLLIHPDFLWNTPLAQKIKQYEYFGYAVHEALHLSDKEEKMIIDIMKNIQQEYRSNIDKF
SQDVIIAQIELLLTYSERFYNRQFITRKINNHEILARLEKLLEEYFNNDSIIKKGIPTVQYIAENLNVSPNYLSGLLKHL
TGQSTQQHIHNKLIEKAKEKLSTTNLSVSEIAFELGFEHQQSFSKLFKTKTNVSPLEFRQSFN

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35657; Mature: 35526

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANQQPHRVKSISEFHEFRDLPKPEHPLVSVYNFEDLKYLNKEEPKSLILDFYSIALKRN
CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHCCCCCHHHHHHHHHHHHHHCC
ANAKMRYGQQEYDFKEGVLLFIAPGQVFSIEGNSELQHTGHSLLIHPDFLWNTPLAQKIK
CCCHHCCCCHHCCCCCCEEEEEECCEEEEECCCCCHHHCCCEEEECCCHHHCCHHHHHHH
QYEYFGYAVHEALHLSDKEEKMIIDIMKNIQQEYRSNIDKFSQDVIIAQIELLLTYSERF
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YNRQFITRKINNHEILARLEKLLEEYFNNDSIIKKGIPTVQYIAENLNVSPNYLSGLLKH
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
LTGQSTQQHIHNKLIEKAKEKLSTTNLSVSEIAFELGFEHQQSFSKLFKTKTNVSPLEFR
HCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHH
QSFN
HCCC
>Mature Secondary Structure 
ANQQPHRVKSISEFHEFRDLPKPEHPLVSVYNFEDLKYLNKEEPKSLILDFYSIALKRN
CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHCCCCCHHHHHHHHHHHHHHCC
ANAKMRYGQQEYDFKEGVLLFIAPGQVFSIEGNSELQHTGHSLLIHPDFLWNTPLAQKIK
CCCHHCCCCHHCCCCCCEEEEEECCEEEEECCCCCHHHCCCEEEECCCHHHCCHHHHHHH
QYEYFGYAVHEALHLSDKEEKMIIDIMKNIQQEYRSNIDKFSQDVIIAQIELLLTYSERF
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YNRQFITRKINNHEILARLEKLLEEYFNNDSIIKKGIPTVQYIAENLNVSPNYLSGLLKH
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
LTGQSTQQHIHNKLIEKAKEKLSTTNLSVSEIAFELGFEHQQSFSKLFKTKTNVSPLEFR
HCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHH
QSFN
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA