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The map label for this gene is rho [H]

Identifier: 146302389

GI number: 146302389

Start: 5638867

End: 5640681

Strand: Reverse

Name: rho [H]

Synonym: Fjoh_4662

Alternate gene names: 146302389

Gene position: 5640681-5638867 (Counterclockwise)

Preceding gene: 146302393

Following gene: 146302384

Centisome position: 92.52

GC content: 37.74

Gene sequence:

>1815_bases
ATGTTTGATATTTCTGCATTAAAAGAAATGAAGCTTTCTGAGCTTCAAGAAATAGCTAAGCTAGCTAAAACAATAAAGAT
TAACGGCGTTAAAAAAGATACTCTGATTACTCAGATATTAGCGCATCAGGAAGCGGCAGCTGCACCGCCGGCAGAAACTA
TTGCAGAAAAGGAAGTAAACACTGAAAAACCAAAAAGAGCCCGAATTGCTCCTGCTAAAAAAACAGTTAGTAAAAGTGCT
CCGGTTCTAGAATTTGATGCTGTAGAGGAAGCTCCAAAGGAAATTGTAACTCCTGCAGCTGTAGAAGAAAAACAGCCGGC
AGAAGCCGAAGAAGTATCTGAAGATAAAACAGCAGAGAAAAAAGGTCCAAAAGTTGTCAAATTCAATAAGTCGGCTTATG
AAAAAAAGGTCGCACAGCAAAAGGAAAAAGAAGCTGTAAAAGAAGTGATTTCGACAGAAGAAACAGCAGAAAATACCACA
ACAGCACCAGTTGCTGAAAAAACTGAAAATACTGCCCCGGTTAAAAAGATTAATCCTAATCAGAATAAAAACCAAAATCC
CAACCAGAATCAAAATCCGAATCAAAATCAAAACCAAAACCCAAATCAAAACGGGAACGGAAATGGTAACAATGGGAATC
AAAACCAAAACCACAAAAACAAAAAGAACAACAACAATTTCAGAGATTCTGATTTTGAATTCGATGGAATTATCGAAAGC
GAAGGTGTTCTTGAAATGATGCCGGACGGTTACGGATTTTTGCGTTCTTCTGATTATAATTATTTAGCTTCTCCGGATGA
TATTTATTTATCAACTTCACAAATCAGATTATTTGGTTTAAAAACTGGAGATACCGTAAAAGGTGTGGTTCGTCCTCCAA
AAGAAGGAGAGAAGTTTTTCCCTCTTGTTCGCGTTTTAAAAATTAACGGACATGATCCGCAGGTTGTCCGCGACCGAGTT
TCTTTTGAGCACCTGACACCGGTTTTCCCTTCTGAAAAATTTAAATTAGCCGAAAAAGGCAGCTCTATATCAACTCGTAT
TATCGATTTGTTTTCTCCTATTGGAAAAGGACAGCGTGGAATGATCGTTGCACAGCCAAAAACAGGTAAAACAATGCTTT
TAAAAGACATTGCCAACGCAATTGCAGCTAATCACCCGGAAGTTTATTTAATCGTTCTTTTGATTGATGAGCGTCCTGAG
GAGGTTACCGATATGCAGAGAAGTGTTCGCGGCGAAGTTATCGCGTCAACTTTTGACAGAGAACCGCAGGAACACGTAAA
AATCGCTAATATTGTTTTGGAGAAATCAAAACGTTTAGTTGAATGCGGACATGATGTTGTAATTTTGTTAGATTCTATTA
CACGTTTAGCAAGAGCTTACAATACAGTTCAGCCGGCATCTGGAAAAGTGTTAAGTGGTGGTGTTGATGCGAATGCATTA
CAAAAACCAAAACGTTTCTTTGGAGCAGCAAGAAATGTAGAAAATGGAGGTTCATTAAGTATCATTGCAACTGCATTAAC
CGAAACTGGTTCTAAAATGGATGAGGTGATCTTTGAAGAATTTAAAGGAACTGGTAACATGGAACTTCAGTTAGATCGTA
AAATTGCTAACAAACGTATTTTCCCTGCAATCGATCTTACTTCTTCAAGTACACGCCGCGACGATTTATTACTTGACGAG
AAAACATTACAAAGGATGTGGATCATGCGTAAATATCTATCAGATATGAACCCGGTAGAATCTATGGATTTTGTAAACGA
CCGTTTCAAGAAAACAAAGAACAACGAAGAGTTTTTGATTTCTATGAATGACTAA

Upstream 100 bases:

>100_bases
AAATACCGTAAGCACTTCATACTGCGGTCAATTGAAATAAATTATCTACCTATTCTTTTTACAGTATTTCCTTTAAAATA
ATTAAATTCATAGAACATTC

Downstream 100 bases:

>100_bases
AAAGAGGTTCTAAGATGCTAAGGTTCTGAGGCGCTAAGCTTTTTTGTTTAACTTTAAACTTTAGTTAATAATATAAAAAG
GGATGAGTTTTATAAGCTCA

Product: transcription termination factor Rho

Products: NA

Alternate protein names: ATP-dependent helicase Rho [H]

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MFDISALKEMKLSELQEIAKLAKTIKINGVKKDTLITQILAHQEAAAAPPAETIAEKEVNTEKPKRARIAPAKKTVSKSA
PVLEFDAVEEAPKEIVTPAAVEEKQPAEAEEVSEDKTAEKKGPKVVKFNKSAYEKKVAQQKEKEAVKEVISTEETAENTT
TAPVAEKTENTAPVKKINPNQNKNQNPNQNQNPNQNQNQNPNQNGNGNGNNGNQNQNHKNKKNNNNFRDSDFEFDGIIES
EGVLEMMPDGYGFLRSSDYNYLASPDDIYLSTSQIRLFGLKTGDTVKGVVRPPKEGEKFFPLVRVLKINGHDPQVVRDRV
SFEHLTPVFPSEKFKLAEKGSSISTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKDIANAIAANHPEVYLIVLLIDERPE
EVTDMQRSVRGEVIASTFDREPQEHVKIANIVLEKSKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANAL
QKPKRFFGAARNVENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLDRKIANKRIFPAIDLTSSSTRRDDLLLDE
KTLQRMWIMRKYLSDMNPVESMDFVNDRFKKTKNNEEFLISMND

Sequences:

>Translated_604_residues
MFDISALKEMKLSELQEIAKLAKTIKINGVKKDTLITQILAHQEAAAAPPAETIAEKEVNTEKPKRARIAPAKKTVSKSA
PVLEFDAVEEAPKEIVTPAAVEEKQPAEAEEVSEDKTAEKKGPKVVKFNKSAYEKKVAQQKEKEAVKEVISTEETAENTT
TAPVAEKTENTAPVKKINPNQNKNQNPNQNQNPNQNQNQNPNQNGNGNGNNGNQNQNHKNKKNNNNFRDSDFEFDGIIES
EGVLEMMPDGYGFLRSSDYNYLASPDDIYLSTSQIRLFGLKTGDTVKGVVRPPKEGEKFFPLVRVLKINGHDPQVVRDRV
SFEHLTPVFPSEKFKLAEKGSSISTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKDIANAIAANHPEVYLIVLLIDERPE
EVTDMQRSVRGEVIASTFDREPQEHVKIANIVLEKSKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANAL
QKPKRFFGAARNVENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLDRKIANKRIFPAIDLTSSSTRRDDLLLDE
KTLQRMWIMRKYLSDMNPVESMDFVNDRFKKTKNNEEFLISMND
>Mature_604_residues
MFDISALKEMKLSELQEIAKLAKTIKINGVKKDTLITQILAHQEAAAAPPAETIAEKEVNTEKPKRARIAPAKKTVSKSA
PVLEFDAVEEAPKEIVTPAAVEEKQPAEAEEVSEDKTAEKKGPKVVKFNKSAYEKKVAQQKEKEAVKEVISTEETAENTT
TAPVAEKTENTAPVKKINPNQNKNQNPNQNQNPNQNQNQNPNQNGNGNGNNGNQNQNHKNKKNNNNFRDSDFEFDGIIES
EGVLEMMPDGYGFLRSSDYNYLASPDDIYLSTSQIRLFGLKTGDTVKGVVRPPKEGEKFFPLVRVLKINGHDPQVVRDRV
SFEHLTPVFPSEKFKLAEKGSSISTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKDIANAIAANHPEVYLIVLLIDERPE
EVTDMQRSVRGEVIASTFDREPQEHVKIANIVLEKSKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANAL
QKPKRFFGAARNVENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLDRKIANKRIFPAIDLTSSSTRRDDLLLDE
KTLQRMWIMRKYLSDMNPVESMDFVNDRFKKTKNNEEFLISMND

Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]

COG id: COG1158

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rho family [H]

Homologues:

Organism=Escherichia coli, GI1790217, Length=369, Percent_Identity=60.9756097560976, Blast_Score=476, Evalue=1e-135,

Paralogues:

None

Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR012340
- InterPro:   IPR011113
- InterPro:   IPR004665 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF07497 Rho_RNA_bind [H]

EC number: NA

Molecular weight: Translated: 67286; Mature: 67286

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDISALKEMKLSELQEIAKLAKTIKINGVKKDTLITQILAHQEAAAAPPAETIAEKEVN
CCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
TEKPKRARIAPAKKTVSKSAPVLEFDAVEEAPKEIVTPAAVEEKQPAEAEEVSEDKTAEK
CCCCCCCCCCCHHHHHHCCCCCEEEHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHH
KGPKVVKFNKSAYEKKVAQQKEKEAVKEVISTEETAENTTTAPVAEKTENTAPVKKINPN
CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCC
QNKNQNPNQNQNPNQNQNQNPNQNGNGNGNNGNQNQNHKNKKNNNNFRDSDFEFDGIIES
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
EGVLEMMPDGYGFLRSSDYNYLASPDDIYLSTSQIRLFGLKTGDTVKGVVRPPKEGEKFF
CCCCEECCCCCCEEECCCCCCCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCCHHH
PLVRVLKINGHDPQVVRDRVSFEHLTPVFPSEKFKLAEKGSSISTRIIDLFSPIGKGQRG
HEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCC
MIVAQPKTGKTMLLKDIANAIAANHPEVYLIVLLIDERPEEVTDMQRSVRGEVIASTFDR
EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
EPQEHVKIANIVLEKSKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANAL
CHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHH
QKPKRFFGAARNVENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLDRKIANKRI
HHHHHHHHHHCCCCCCCCEEEEEEHHHHCCHHHHHHHHHHHCCCCCEEEEECHHHHCCCC
FPAIDLTSSSTRRDDLLLDEKTLQRMWIMRKYLSDMNPVESMDFVNDRFKKTKNNEEFLI
CCEEECCCCCCCCCHHEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEE
SMND
EECC
>Mature Secondary Structure
MFDISALKEMKLSELQEIAKLAKTIKINGVKKDTLITQILAHQEAAAAPPAETIAEKEVN
CCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
TEKPKRARIAPAKKTVSKSAPVLEFDAVEEAPKEIVTPAAVEEKQPAEAEEVSEDKTAEK
CCCCCCCCCCCHHHHHHCCCCCEEEHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHH
KGPKVVKFNKSAYEKKVAQQKEKEAVKEVISTEETAENTTTAPVAEKTENTAPVKKINPN
CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCC
QNKNQNPNQNQNPNQNQNQNPNQNGNGNGNNGNQNQNHKNKKNNNNFRDSDFEFDGIIES
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
EGVLEMMPDGYGFLRSSDYNYLASPDDIYLSTSQIRLFGLKTGDTVKGVVRPPKEGEKFF
CCCCEECCCCCCEEECCCCCCCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCCHHH
PLVRVLKINGHDPQVVRDRVSFEHLTPVFPSEKFKLAEKGSSISTRIIDLFSPIGKGQRG
HEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCC
MIVAQPKTGKTMLLKDIANAIAANHPEVYLIVLLIDERPEEVTDMQRSVRGEVIASTFDR
EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
EPQEHVKIANIVLEKSKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANAL
CHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHH
QKPKRFFGAARNVENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLDRKIANKRI
HHHHHHHHHHCCCCCCCCEEEEEEHHHHCCHHHHHHHHHHHCCCCCEEEEECHHHHCCCC
FPAIDLTSSSTRRDDLLLDEKTLQRMWIMRKYLSDMNPVESMDFVNDRFKKTKNNEEFLI
CCEEECCCCCCCCCHHEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEE
SMND
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA