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The map label for this gene is tdcF [C]

Identifier: 146302314

GI number: 146302314

Start: 5548068

End: 5548448

Strand: Direct

Name: tdcF [C]

Synonym: Fjoh_4587

Alternate gene names: 146302314

Gene position: 5548068-5548448 (Clockwise)

Preceding gene: 146302313

Following gene: 146302320

Centisome position: 91.0

GC content: 36.22

Gene sequence:

>381_bases
ATGAAAAAAATAATCTTTACAGAAAAGGCTCCGGCTCCTATTGGTCCTTATAATCAAGCCGTTTTATCAGGAAACACATT
GTATGCTTCTGGCCAGATTGCAATTAATCCGGCTACAGGAGAATTAGTTACCGATACTATCAACAACGAAACGACTCAGG
TAATGGAAAATATTGCTGCTATTCTTGAAGCTGCGAATATGACTTTTGAGAATGTAGTTAAAGCTACTATCTTTATTATG
GATATGAACAATTTTGGTGCTATAAACACTATTTACGGTTCGTATTTTAACGAAAAAACCGCTCCAGCACGTGAAACGGT
TCAAGTGGCATGTCTGCCAAAAAATGTAAATGTTGAGATTTCTATAATTGCTGTGCAATAG

Upstream 100 bases:

>100_bases
AACTTCTTCATAGGAATTAAATCTGGTATGCTTAGTGACATTAAATGGAACAAACGAAGCACTATAAATCGATAATTCAT
CGACTTAAAATAATTTTATC

Downstream 100 bases:

>100_bases
CATCTAATAATAATTGTGCCGTTGCTTCATTTGTTGCCAGCGGCACATTATGTACGTCACAAACACGAATCAGCATATTA
ATATCTGCTTCATGAGGATG

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKKIIFTEKAPAPIGPYNQAVLSGNTLYASGQIAINPATGELVTDTINNETTQVMENIAAILEAANMTFENVVKATIFIM
DMNNFGAINTIYGSYFNEKTAPARETVQVACLPKNVNVEISIIAVQ

Sequences:

>Translated_126_residues
MKKIIFTEKAPAPIGPYNQAVLSGNTLYASGQIAINPATGELVTDTINNETTQVMENIAAILEAANMTFENVVKATIFIM
DMNNFGAINTIYGSYFNEKTAPARETVQVACLPKNVNVEISIIAVQ
>Mature_126_residues
MKKIIFTEKAPAPIGPYNQAVLSGNTLYASGQIAINPATGELVTDTINNETTQVMENIAAILEAANMTFENVVKATIFIM
DMNNFGAINTIYGSYFNEKTAPARETVQVACLPKNVNVEISIIAVQ

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=126, Percent_Identity=45.2380952380952, Blast_Score=122, Evalue=9e-29,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=45.3125, Blast_Score=117, Evalue=2e-28,
Organism=Escherichia coli, GI87082396, Length=128, Percent_Identity=46.875, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI1787245, Length=123, Percent_Identity=32.520325203252, Blast_Score=70, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=41.9354838709677, Blast_Score=108, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=41.9354838709677, Blast_Score=108, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=41.9354838709677, Blast_Score=108, Evalue=9e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=122, Percent_Identity=37.7049180327869, Blast_Score=88, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=41.1764705882353, Blast_Score=82, Evalue=3e-17,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=40.8, Blast_Score=102, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13600; Mature: 13600

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIIFTEKAPAPIGPYNQAVLSGNTLYASGQIAINPATGELVTDTINNETTQVMENIAA
CCCEEECCCCCCCCCCCCCEEEECCEEEECCEEEEECCCCCEEEECCCCHHHHHHHHHHH
ILEAANMTFENVVKATIFIMDMNNFGAINTIYGSYFNEKTAPARETVQVACLPKNVNVEI
HHHHCCCCHHHHEEEEEEEEECCCCCCEEHHHCCCCCCCCCCCCCEEEEEEECCCCCEEE
SIIAVQ
EEEEEC
>Mature Secondary Structure
MKKIIFTEKAPAPIGPYNQAVLSGNTLYASGQIAINPATGELVTDTINNETTQVMENIAA
CCCEEECCCCCCCCCCCCCEEEECCEEEECCEEEEECCCCCEEEECCCCHHHHHHHHHHH
ILEAANMTFENVVKATIFIMDMNNFGAINTIYGSYFNEKTAPARETVQVACLPKNVNVEI
HHHHCCCCHHHHEEEEEEEEECCCCCCEEHHHCCCCCCCCCCCCCEEEEEEECCCCCEEE
SIIAVQ
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]