| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146302285
Identifier: 146302285
GI number: 146302285
Start: 5508689
End: 5510269
Strand: Reverse
Name: 146302285
Synonym: Fjoh_4558
Alternate gene names: NA
Gene position: 5510269-5508689 (Counterclockwise)
Preceding gene: 146302286
Following gene: 146302284
Centisome position: 90.38
GC content: 36.31
Gene sequence:
>1581_bases ATGAAACTAAATAATATAACAAAAGCAACTATTTGTACTTTGTTACTCGCCGCTGTGGGATGTACAGATAATTTTGAAGA CATTAATACTAATCCAAATGGTATTACACTTCCTGATTTTGAACAAGATTTTAATCATATCAAAGGAGGTTTTGCTCCTA TGTTTAACAATATCCAAGTCCTTACTCCAGAATGGGTTTATCAATTGCAGCAAGGCTTGAACTCAGATATTTGGTCAGGT TATATGGCAACTCCAACTGGTTTTGAGAGTGGTGTAAATAATACAACATATGCATTGTTAGATAATTGGAACGGATTTAT CTGGGATTATGGATATAAAAATGTAATGTTTAATGCATATGATATCGCTAATAAATCTAAAGGTAAATATGATCAATTTT ATGCATTGTCATTGATTTTGAAAGTTGAGGGAATGCATAGAATGACAGATACTTTTGGACCAATCATTTACTCTAAATTT GGATCAAATGATGCGACTATTGCATATGATTCTCAAGAAGAAGTTTATACTCAAATGTTTGCTGAATTGGATACTGCCGT GGCAGAATTAACTAAAAGGATTGATGCTGGTGAAGCTTCTACATTTGAGTCTACAGATATGACAGGCTACAAAGGAAAAT ACGAATCATGGGTAAGATTTGCAAATACTTTAAGATTAAGATTAGCAATGCGTATCGTGAAAGTTAAACCAGCTTTGGCA AAAACAGAAGCAGAAAAAGCTGTGGCTCAAAAATTTGGTGTGATGCTGGTTAACGATGATTCATTTAAAATTGTATCCCC AGTTTATACAAACCCAATTGCAACAATCAGCAGTTCGTGGTTAGATATACGCATGTCTGCTGATATGGAGTCTATAATGA AGGGATATCAGGATCCTAGAATAGCTTCTTATTTTGATACATCAAAACAATTTCCTAATGAATATAAAGGAGTAAGAACA GGAATAGCAATTAGCGGAAAATCGGATCATCAGGATTTTTCTGGAATAGGTGCTGTGGTAAGATCAAAAGAAATCTATCT TATGAACGCTGCAGAAGCTTATTTCTTAAGAGCTGAGGGGGCTTTAAGAGGTTGGAATATGGGCGGTACTGCTCAGGAAT TATACGAAGCGGGGATTAAAGCTTCATTCGATCAGAGAGGAGTTTCTGGTGCAGCAGGTTATATAGCTGATAATACAAAA ACAGCAGCTGCGTATGTCGATCCTAATTTTCCGGAAAATAATTCAGATCCAGTAAATAATGTTACAGTGGCATGGGATGC AGCGGCGACAAATGAAGTAAAACTACAAAAAATCATTACTCAAAAATGGATTGCAGGCTTTCCTGAGGGACAAGAAGCAT GGTCTGATTACAGAAGAACCGGATATCCTAAATTATTCCCAGTACTTAAAAATTACAGCGGCGGAGCAATTACAACTGAG TTTGGTGTAAGAAGAATCAATTTCGTTCAGTCTGAGAAAGCTGGAAATTCAGGAGGTGTTGCTACTGGAGTTTCTAAATT GGGCGGACCAGATAATGGAGGAACCAGAGTTTGGTGGGATGTAAATGCTCCGAATTTCTAA
Upstream 100 bases:
>100_bases TTAAGTACAGGTCAAGGTTTACAAGGGGTTGATATTTATGGTTTACCTTCTACCAGAAGTATTGGTCTTAATTTAAATGT AACTTTCTAATTTAAAAAAC
Downstream 100 bases:
>100_bases AAAACAAAAATAAATAGATTACAGATTTTAAGTTTGGTTAGCAAATGGTACAAGCAGTGAAAATTGCTTGTGCCATTTCA AAAACCAAAATTGTATATAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 526; Mature: 526
Protein sequence:
>526_residues MKLNNITKATICTLLLAAVGCTDNFEDINTNPNGITLPDFEQDFNHIKGGFAPMFNNIQVLTPEWVYQLQQGLNSDIWSG YMATPTGFESGVNNTTYALLDNWNGFIWDYGYKNVMFNAYDIANKSKGKYDQFYALSLILKVEGMHRMTDTFGPIIYSKF GSNDATIAYDSQEEVYTQMFAELDTAVAELTKRIDAGEASTFESTDMTGYKGKYESWVRFANTLRLRLAMRIVKVKPALA KTEAEKAVAQKFGVMLVNDDSFKIVSPVYTNPIATISSSWLDIRMSADMESIMKGYQDPRIASYFDTSKQFPNEYKGVRT GIAISGKSDHQDFSGIGAVVRSKEIYLMNAAEAYFLRAEGALRGWNMGGTAQELYEAGIKASFDQRGVSGAAGYIADNTK TAAAYVDPNFPENNSDPVNNVTVAWDAAATNEVKLQKIITQKWIAGFPEGQEAWSDYRRTGYPKLFPVLKNYSGGAITTE FGVRRINFVQSEKAGNSGGVATGVSKLGGPDNGGTRVWWDVNAPNF
Sequences:
>Translated_526_residues MKLNNITKATICTLLLAAVGCTDNFEDINTNPNGITLPDFEQDFNHIKGGFAPMFNNIQVLTPEWVYQLQQGLNSDIWSG YMATPTGFESGVNNTTYALLDNWNGFIWDYGYKNVMFNAYDIANKSKGKYDQFYALSLILKVEGMHRMTDTFGPIIYSKF GSNDATIAYDSQEEVYTQMFAELDTAVAELTKRIDAGEASTFESTDMTGYKGKYESWVRFANTLRLRLAMRIVKVKPALA KTEAEKAVAQKFGVMLVNDDSFKIVSPVYTNPIATISSSWLDIRMSADMESIMKGYQDPRIASYFDTSKQFPNEYKGVRT GIAISGKSDHQDFSGIGAVVRSKEIYLMNAAEAYFLRAEGALRGWNMGGTAQELYEAGIKASFDQRGVSGAAGYIADNTK TAAAYVDPNFPENNSDPVNNVTVAWDAAATNEVKLQKIITQKWIAGFPEGQEAWSDYRRTGYPKLFPVLKNYSGGAITTE FGVRRINFVQSEKAGNSGGVATGVSKLGGPDNGGTRVWWDVNAPNF >Mature_526_residues MKLNNITKATICTLLLAAVGCTDNFEDINTNPNGITLPDFEQDFNHIKGGFAPMFNNIQVLTPEWVYQLQQGLNSDIWSG YMATPTGFESGVNNTTYALLDNWNGFIWDYGYKNVMFNAYDIANKSKGKYDQFYALSLILKVEGMHRMTDTFGPIIYSKF GSNDATIAYDSQEEVYTQMFAELDTAVAELTKRIDAGEASTFESTDMTGYKGKYESWVRFANTLRLRLAMRIVKVKPALA KTEAEKAVAQKFGVMLVNDDSFKIVSPVYTNPIATISSSWLDIRMSADMESIMKGYQDPRIASYFDTSKQFPNEYKGVRT GIAISGKSDHQDFSGIGAVVRSKEIYLMNAAEAYFLRAEGALRGWNMGGTAQELYEAGIKASFDQRGVSGAAGYIADNTK TAAAYVDPNFPENNSDPVNNVTVAWDAAATNEVKLQKIITQKWIAGFPEGQEAWSDYRRTGYPKLFPVLKNYSGGAITTE FGVRRINFVQSEKAGNSGGVATGVSKLGGPDNGGTRVWWDVNAPNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58155; Mature: 58155
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLNNITKATICTLLLAAVGCTDNFEDINTNPNGITLPDFEQDFNHIKGGFAPMFNNIQV CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCEE LTPEWVYQLQQGLNSDIWSGYMATPTGFESGVNNTTYALLDNWNGFIWDYGYKNVMFNAY ECHHHHHHHHHCCCHHHHCCEECCCCCCCCCCCCCEEEEEECCCCEEEECCCCCEEEEEH DIANKSKGKYDQFYALSLILKVEGMHRMTDTFGPIIYSKFGSNDATIAYDSQEEVYTQMF CCCCCCCCCCHHHHHEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH AELDTAVAELTKRIDAGEASTFESTDMTGYKGKYESWVRFANTLRLRLAMRIVKVKPALA HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH KTEAEKAVAQKFGVMLVNDDSFKIVSPVYTNPIATISSSWLDIRMSADMESIMKGYQDPR HHHHHHHHHHHHCEEEECCCCCEEECCHHCCCHHHHCCCCEEEEECCCHHHHHHCCCCCC IASYFDTSKQFPNEYKGVRTGIAISGKSDHQDFSGIGAVVRSKEIYLMNAAEAYFLRAEG HHHHHHHHHCCCHHHCCCEECEEECCCCCCCHHHHHHHHHCCCEEEEEECCCEEEEEECC ALRGWNMGGTAQELYEAGIKASFDQRGVSGAAGYIADNTKTAAAYVDPNFPENNSDPVNN CCCCCCCCCCHHHHHHHCCCCCHHHCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCC VTVAWDAAATNEVKLQKIITQKWIAGFPEGQEAWSDYRRTGYPKLFPVLKNYSGGAITTE EEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCEEEHH FGVRRINFVQSEKAGNSGGVATGVSKLGGPDNGGTRVWWDVNAPNF HCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCC >Mature Secondary Structure MKLNNITKATICTLLLAAVGCTDNFEDINTNPNGITLPDFEQDFNHIKGGFAPMFNNIQV CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCEE LTPEWVYQLQQGLNSDIWSGYMATPTGFESGVNNTTYALLDNWNGFIWDYGYKNVMFNAY ECHHHHHHHHHCCCHHHHCCEECCCCCCCCCCCCCEEEEEECCCCEEEECCCCCEEEEEH DIANKSKGKYDQFYALSLILKVEGMHRMTDTFGPIIYSKFGSNDATIAYDSQEEVYTQMF CCCCCCCCCCHHHHHEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH AELDTAVAELTKRIDAGEASTFESTDMTGYKGKYESWVRFANTLRLRLAMRIVKVKPALA HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH KTEAEKAVAQKFGVMLVNDDSFKIVSPVYTNPIATISSSWLDIRMSADMESIMKGYQDPR HHHHHHHHHHHHCEEEECCCCCEEECCHHCCCHHHHCCCCEEEEECCCHHHHHHCCCCCC IASYFDTSKQFPNEYKGVRTGIAISGKSDHQDFSGIGAVVRSKEIYLMNAAEAYFLRAEG HHHHHHHHHCCCHHHCCCEECEEECCCCCCCHHHHHHHHHCCCEEEEEECCCEEEEEECC ALRGWNMGGTAQELYEAGIKASFDQRGVSGAAGYIADNTKTAAAYVDPNFPENNSDPVNN CCCCCCCCCCHHHHHHHCCCCCHHHCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCC VTVAWDAAATNEVKLQKIITQKWIAGFPEGQEAWSDYRRTGYPKLFPVLKNYSGGAITTE EEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCEEEHH FGVRRINFVQSEKAGNSGGVATGVSKLGGPDNGGTRVWWDVNAPNF HCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA