Click here to switch to the map view.

The map label for this gene is ydcN [C]

Identifier: 146302279

GI number: 146302279

Start: 5497586

End: 5497816

Strand: Reverse

Name: ydcN [C]

Synonym: Fjoh_4552

Alternate gene names: 146302279

Gene position: 5497816-5497586 (Counterclockwise)

Preceding gene: 146302281

Following gene: 146302278

Centisome position: 90.17

GC content: 30.3

Gene sequence:

>231_bases
ATGGATATTTCAGAAGAAACTTTTATTATAAATCTTGGAACTCACATTAGAAAGTTGCGTGAAAAAAGAGGTTTATCTCA
GCAGGATTTGGCTGATGATTGTGGTATTCCTCGAAATCAAATTGGCAGAATTGAAAGAGCTAAAATAAATACAGGTATAA
AAACTCTTATTAGAATTGCAAATGCTTTAGATATTGAACTTGCTGATTTGCTCAGTTTTCAAGTAAAATAA

Upstream 100 bases:

>100_bases
AGGCATTTCTGTAATCATTATCTTATTTTTTGTGTAAATATATTAATTTTTGACACAAATTTGTGTCACAATAAAAAATA
TTTGTTATGACTTTTGAAAT

Downstream 100 bases:

>100_bases
TTTTTGAAGAAAAAAATCTTCTAAATCTGCAGTCTCAATAGCTATTGGGAGCGAGAAACCCTTTGCGAACTTTGCGAATA
CCTTCGCGTCTTTGCGGTTA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MDISEETFIINLGTHIRKLREKRGLSQQDLADDCGIPRNQIGRIERAKINTGIKTLIRIANALDIELADLLSFQVK

Sequences:

>Translated_76_residues
MDISEETFIINLGTHIRKLREKRGLSQQDLADDCGIPRNQIGRIERAKINTGIKTLIRIANALDIELADLLSFQVK
>Mature_76_residues
MDISEETFIINLGTHIRKLREKRGLSQQDLADDCGIPRNQIGRIERAKINTGIKTLIRIANALDIELADLLSFQVK

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8602; Mature: 8602

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISEETFIINLGTHIRKLREKRGLSQQDLADDCGIPRNQIGRIERAKINTGIKTLIRIA
CCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHCCCCHHHHCCCHHHHHHHHHHHHHHHH
NALDIELADLLSFQVK
HHCCHHHHHHHHHCCC
>Mature Secondary Structure
MDISEETFIINLGTHIRKLREKRGLSQQDLADDCGIPRNQIGRIERAKINTGIKTLIRIA
CCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHCCCCHHHHCCCHHHHHHHHHHHHHHHH
NALDIELADLLSFQVK
HHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA