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The map label for this gene is oprF [H]

Identifier: 146302267

GI number: 146302267

Start: 5485766

End: 5487697

Strand: Direct

Name: oprF [H]

Synonym: Fjoh_4540

Alternate gene names: 146302267

Gene position: 5485766-5487697 (Clockwise)

Preceding gene: 146302266

Following gene: 146302275

Centisome position: 89.98

GC content: 34.16

Gene sequence:

>1932_bases
ATGAAAAATTATAGACTTCTCTGCTTAATAATTCTAAATGTTTTTTATGGTTATTCTCAGCAGTCAAAGCTGAACTCAGC
CGATAAAAAATATGACGGTTATGCGTATATCGACGCTATAAAAACTTATGAAAGAGTTGCCGATAAAGGCTATAAATCTG
AAGATTTGTTTAAAAAACTTGGAAATTCTTATTATTTCAATTCTGAGTTTGAAAGCGCCGCAAAATGGTACGGAGAATTG
TTTGCCATCAATACCTCTCCCGAAGCCGAATACTATTACAGATATGCACAGTCATTAAGGTCTACAGGACAGACCGATAA
GGCGAATAAAATTATGAATGAATTTAATGCTAAATACAAAAATGATTCAAGAGGAAAACTCTACAAAGAAGACGTCAATT
ATCTTGATGAGATTAAAGCAAATTCTGGACGTTATAAAATTGAAGATGCAGGAATTAACTCTAAATATTCTGATTATGGA
AGTTTTGTTTACAATAATAAAATCTATTTTGCTTCTGCCAGAGATACTGGAAATTTTTCGCAGAGAAGACATAAATGGAC
AGGCGAATATTATACCAATATTTATAGTGCCAATATCGACCCGCAAAACAGCACAGCAGTAAAACCAGATAAATTTAAAA
CTGCTTTAAATACCAAATTTCACGAATCGACACCTGTTTTTACTAAAGATGGAAACACGGTTTATTTTACCAGAAACAAT
TATATTGACGGTAAAAAAGGAAAAGATGACAATAAAATCACTTTAATAAAACTTTATAAAGCGACTCTCGAAAACGGAAA
ATGGACAAAAATTACAGCTCTTCCATTTACAAGTGACAATTATAGTACTGCGCATCCTGCGTTAAGCCCGGATGAAAAAA
CATTATATTTCGCATCCGATATGCCGGGAAGCATAGGACAGTCTGACATTTATAAAGTAAGCATAAACAGTGACGGCAAT
TTTGGAACACCGCAAAATCTCGGAAAACCCATCAATACCGAAGGCAAAGAAACGTTTCCGTATGTAACCAGCGAAAATGA
AATCTATTTTGCTTCAGATGGTCATCCCGGACTTGGAGGTCTTGATGTTTTTGTTGGACAGTTTGATGAAAACGGAACAG
TAAGCGATATTCAAAATTTAGGAAATGACATTAATTCACCAAAAGATGATTTTGCTTACATCATTGATCCAGTTTCGAGA
CAAGGTTATTTCAGTTCTAATAAAGACGGCGGAATGGGCTCTGATGACATTTACAAATTTCTAGAAACCAAAAGATTAAA
ATGTCTACAGGAATTATACGGAGTTATTACAGATTCTGAAAACGGCGTTGTACTTCCGGGTTCTAAAGTTACTTTATATG
AAAATCAAAAAATTAAAAATTCTACGGTTTCAAATACAGCCGGACAATATAGTTTTACTGTAGAATGCGGAAAAACCTAT
AGTGTAAGAGCAGAAAAACCTGATTATGCAACAAAAGAAGTTGACATAACAATTGCAAAAACAAATGGAAAAACCAATCT
TCCTATTGCACTCGATAAATCTGTCTGCAAAGTTGCTGTGGGCGATGATTTAGGAAAATGTTTTGGCATTAAAATGATTT
ATTTTGATTTAGACAAATCGAATATTCGTACCGAAGCGGCTTTAGATTTAGAAAAAATATTAGATGTATTGAATCAAAAT
CCAACAATGAAACTGGATATTCGTTCACATACAGACAGCAGGGCTTCTCATCAATATAATGAAGCTTTGTCTGATAGAAG
AGCAAAATCGACCATAAGCTGGCTCATTCAAAACGGAGTTGCCAAAAACCGTTTAACCGGAAAAGGTTATGGCGAAACAC
AATTAGTTAATCAATGTTCTGATGGTGTTAACTGCACTGAAGAAGAACACCAAATGAACAGACGAAGCGAATTTATTATA
ACCGCATTGTAA

Upstream 100 bases:

>100_bases
TAATTATAATTCAGGATCGCATGAAATATTCCTGCGTTACGAATTCTTCAAAAACAATGGTAAAATGACAACTCCTCGTT
TCTTCTAAAAAATAGGTATT

Downstream 100 bases:

>100_bases
CTTAGAAAAACTGACTAAAAAAAATAAAAGCTGTCTATAAAGACAGCTTTTATTAAAAAAAACGGTCGTTGCAAATCAGG
AATCACAACGACAACTAACC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 643; Mature: 643

Protein sequence:

>643_residues
MKNYRLLCLIILNVFYGYSQQSKLNSADKKYDGYAYIDAIKTYERVADKGYKSEDLFKKLGNSYYFNSEFESAAKWYGEL
FAINTSPEAEYYYRYAQSLRSTGQTDKANKIMNEFNAKYKNDSRGKLYKEDVNYLDEIKANSGRYKIEDAGINSKYSDYG
SFVYNNKIYFASARDTGNFSQRRHKWTGEYYTNIYSANIDPQNSTAVKPDKFKTALNTKFHESTPVFTKDGNTVYFTRNN
YIDGKKGKDDNKITLIKLYKATLENGKWTKITALPFTSDNYSTAHPALSPDEKTLYFASDMPGSIGQSDIYKVSINSDGN
FGTPQNLGKPINTEGKETFPYVTSENEIYFASDGHPGLGGLDVFVGQFDENGTVSDIQNLGNDINSPKDDFAYIIDPVSR
QGYFSSNKDGGMGSDDIYKFLETKRLKCLQELYGVITDSENGVVLPGSKVTLYENQKIKNSTVSNTAGQYSFTVECGKTY
SVRAEKPDYATKEVDITIAKTNGKTNLPIALDKSVCKVAVGDDLGKCFGIKMIYFDLDKSNIRTEAALDLEKILDVLNQN
PTMKLDIRSHTDSRASHQYNEALSDRRAKSTISWLIQNGVAKNRLTGKGYGETQLVNQCSDGVNCTEEEHQMNRRSEFII
TAL

Sequences:

>Translated_643_residues
MKNYRLLCLIILNVFYGYSQQSKLNSADKKYDGYAYIDAIKTYERVADKGYKSEDLFKKLGNSYYFNSEFESAAKWYGEL
FAINTSPEAEYYYRYAQSLRSTGQTDKANKIMNEFNAKYKNDSRGKLYKEDVNYLDEIKANSGRYKIEDAGINSKYSDYG
SFVYNNKIYFASARDTGNFSQRRHKWTGEYYTNIYSANIDPQNSTAVKPDKFKTALNTKFHESTPVFTKDGNTVYFTRNN
YIDGKKGKDDNKITLIKLYKATLENGKWTKITALPFTSDNYSTAHPALSPDEKTLYFASDMPGSIGQSDIYKVSINSDGN
FGTPQNLGKPINTEGKETFPYVTSENEIYFASDGHPGLGGLDVFVGQFDENGTVSDIQNLGNDINSPKDDFAYIIDPVSR
QGYFSSNKDGGMGSDDIYKFLETKRLKCLQELYGVITDSENGVVLPGSKVTLYENQKIKNSTVSNTAGQYSFTVECGKTY
SVRAEKPDYATKEVDITIAKTNGKTNLPIALDKSVCKVAVGDDLGKCFGIKMIYFDLDKSNIRTEAALDLEKILDVLNQN
PTMKLDIRSHTDSRASHQYNEALSDRRAKSTISWLIQNGVAKNRLTGKGYGETQLVNQCSDGVNCTEEEHQMNRRSEFII
TAL
>Mature_643_residues
MKNYRLLCLIILNVFYGYSQQSKLNSADKKYDGYAYIDAIKTYERVADKGYKSEDLFKKLGNSYYFNSEFESAAKWYGEL
FAINTSPEAEYYYRYAQSLRSTGQTDKANKIMNEFNAKYKNDSRGKLYKEDVNYLDEIKANSGRYKIEDAGINSKYSDYG
SFVYNNKIYFASARDTGNFSQRRHKWTGEYYTNIYSANIDPQNSTAVKPDKFKTALNTKFHESTPVFTKDGNTVYFTRNN
YIDGKKGKDDNKITLIKLYKATLENGKWTKITALPFTSDNYSTAHPALSPDEKTLYFASDMPGSIGQSDIYKVSINSDGN
FGTPQNLGKPINTEGKETFPYVTSENEIYFASDGHPGLGGLDVFVGQFDENGTVSDIQNLGNDINSPKDDFAYIIDPVSR
QGYFSSNKDGGMGSDDIYKFLETKRLKCLQELYGVITDSENGVVLPGSKVTLYENQKIKNSTVSNTAGQYSFTVECGKTY
SVRAEKPDYATKEVDITIAKTNGKTNLPIALDKSVCKVAVGDDLGKCFGIKMIYFDLDKSNIRTEAALDLEKILDVLNQN
PTMKLDIRSHTDSRASHQYNEALSDRRAKSTISWLIQNGVAKNRLTGKGYGETQLVNQCSDGVNCTEEEHQMNRRSEFII
TAL

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 72467; Mature: 72467

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNYRLLCLIILNVFYGYSQQSKLNSADKKYDGYAYIDAIKTYERVADKGYKSEDLFKKL
CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHC
GNSYYFNSEFESAAKWYGELFAINTSPEAEYYYRYAQSLRSTGQTDKANKIMNEFNAKYK
CCCEEECCHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
NDSRGKLYKEDVNYLDEIKANSGRYKIEDAGINSKYSDYGSFVYNNKIYFASARDTGNFS
CCCCCCEEHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEECCEEEEEECCCCCCHH
QRRHKWTGEYYTNIYSANIDPQNSTAVKPDKFKTALNTKFHESTPVFTKDGNTVYFTRNN
HHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEECCCCEEEEEECC
YIDGKKGKDDNKITLIKLYKATLENGKWTKITALPFTSDNYSTAHPALSPDEKTLYFASD
CCCCCCCCCCCCEEEEEEEEHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECC
MPGSIGQSDIYKVSINSDGNFGTPQNLGKPINTEGKETFPYVTSENEIYFASDGHPGLGG
CCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCCC
LDVFVGQFDENGTVSDIQNLGNDINSPKDDFAYIIDPVSRQGYFSSNKDGGMGSDDIYKF
CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHH
LETKRLKCLQELYGVITDSENGVVLPGSKVTLYENQKIKNSTVSNTAGQYSFTVECGKTY
HHHHHHHHHHHHHHEEECCCCCEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCEE
SVRAEKPDYATKEVDITIAKTNGKTNLPIALDKSVCKVAVGDDLGKCFGIKMIYFDLDKS
EEECCCCCCCCEEEEEEEEECCCCCCCCEEECCCCEEEECCCCCCHHHEEEEEEEECCCC
NIRTEAALDLEKILDVLNQNPTMKLDIRSHTDSRASHQYNEALSDRRAKSTISWLIQNGV
CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
AKNRLTGKGYGETQLVNQCSDGVNCTEEEHQMNRRSEFIITAL
HHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEC
>Mature Secondary Structure
MKNYRLLCLIILNVFYGYSQQSKLNSADKKYDGYAYIDAIKTYERVADKGYKSEDLFKKL
CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHC
GNSYYFNSEFESAAKWYGELFAINTSPEAEYYYRYAQSLRSTGQTDKANKIMNEFNAKYK
CCCEEECCHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
NDSRGKLYKEDVNYLDEIKANSGRYKIEDAGINSKYSDYGSFVYNNKIYFASARDTGNFS
CCCCCCEEHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEECCEEEEEECCCCCCHH
QRRHKWTGEYYTNIYSANIDPQNSTAVKPDKFKTALNTKFHESTPVFTKDGNTVYFTRNN
HHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEECCCCEEEEEECC
YIDGKKGKDDNKITLIKLYKATLENGKWTKITALPFTSDNYSTAHPALSPDEKTLYFASD
CCCCCCCCCCCCEEEEEEEEHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECC
MPGSIGQSDIYKVSINSDGNFGTPQNLGKPINTEGKETFPYVTSENEIYFASDGHPGLGG
CCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCCC
LDVFVGQFDENGTVSDIQNLGNDINSPKDDFAYIIDPVSRQGYFSSNKDGGMGSDDIYKF
CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHH
LETKRLKCLQELYGVITDSENGVVLPGSKVTLYENQKIKNSTVSNTAGQYSFTVECGKTY
HHHHHHHHHHHHHHEEECCCCCEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCEE
SVRAEKPDYATKEVDITIAKTNGKTNLPIALDKSVCKVAVGDDLGKCFGIKMIYFDLDKS
EEECCCCCCCCEEEEEEEEECCCCCCCCEEECCCCEEEECCCCCCHHHEEEEEEEECCCC
NIRTEAALDLEKILDVLNQNPTMKLDIRSHTDSRASHQYNEALSDRRAKSTISWLIQNGV
CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
AKNRLTGKGYGETQLVNQCSDGVNCTEEEHQMNRRSEFIITAL
HHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]