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The map label for this gene is ygaU [C]

Identifier: 146302254

GI number: 146302254

Start: 5467398

End: 5467769

Strand: Reverse

Name: ygaU [C]

Synonym: Fjoh_4527

Alternate gene names: 146302254

Gene position: 5467769-5467398 (Counterclockwise)

Preceding gene: 146302255

Following gene: 146302253

Centisome position: 89.68

GC content: 36.02

Gene sequence:

>372_bases
ATGAGTTTACAAGATAAATACAGAGAACTGACCAATTTAGCCGGCGATTTACAAATAGCCAATTTACAGGTTAGAGAACA
AGATAATGTGCTGTATATTGACGGTACAGCAAAATCTGCAGCAGATAAAGAAAAACTTTGGAATGCTTATGGAGAAATTG
ATCCGGATTATCGTTCTGGAGATGTAGTAATGAATATTGAAGTAGAAGAACATGTTTCGAGAGAATATACAGTTGAAGCT
GGTGATTCTCTTTCTAAAATAGGAAAAGCATATGGAGTTTCCTGGCAGGATATTTTTGAAGCCAATAGAGACGTTATTTC
AAACCCCGATTTGATTCAGCCAGGCTGGAAGTTGAAAATACCAACAGTATAA

Upstream 100 bases:

>100_bases
GGAGAAATAAAAAGAGATAAACTACAGCCATTGATGCAGAGTTTACAAGAACTGAAACCCAAAAAAGTTGATAACAAATT
AACTATTAAATAAAATTGTT

Downstream 100 bases:

>100_bases
AAGTTTTTAAAAGTCCAATCTTAATTGATTTGGACTTTTTTATTTTAATTAGAAAAGTATTAACCCGATAAAGTTTTTTG
ATGTTACCAATTTTTGGTAA

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: LysM Domain-Containing Protein; LysM Domain/BON Superfamily Protein

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSLQDKYRELTNLAGDLQIANLQVREQDNVLYIDGTAKSAADKEKLWNAYGEIDPDYRSGDVVMNIEVEEHVSREYTVEA
GDSLSKIGKAYGVSWQDIFEANRDVISNPDLIQPGWKLKIPTV

Sequences:

>Translated_123_residues
MSLQDKYRELTNLAGDLQIANLQVREQDNVLYIDGTAKSAADKEKLWNAYGEIDPDYRSGDVVMNIEVEEHVSREYTVEA
GDSLSKIGKAYGVSWQDIFEANRDVISNPDLIQPGWKLKIPTV
>Mature_122_residues
SLQDKYRELTNLAGDLQIANLQVREQDNVLYIDGTAKSAADKEKLWNAYGEIDPDYRSGDVVMNIEVEEHVSREYTVEAG
DSLSKIGKAYGVSWQDIFEANRDVISNPDLIQPGWKLKIPTV

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13876; Mature: 13744

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLQDKYRELTNLAGDLQIANLQVREQDNVLYIDGTAKSAADKEKLWNAYGEIDPDYRSG
CCHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCC
DVVMNIEVEEHVSREYTVEAGDSLSKIGKAYGVSWQDIFEANRDVISNPDLIQPGWKLKI
CEEEEEEHHHHCCCEEEECCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCEECCCCEEEC
PTV
CCC
>Mature Secondary Structure 
SLQDKYRELTNLAGDLQIANLQVREQDNVLYIDGTAKSAADKEKLWNAYGEIDPDYRSG
CHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCC
DVVMNIEVEEHVSREYTVEAGDSLSKIGKAYGVSWQDIFEANRDVISNPDLIQPGWKLKI
CEEEEEEHHHHCCCEEEECCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCEECCCCEEEC
PTV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA