Click here to switch to the map view.

The map label for this gene is sigZ [H]

Identifier: 146302158

GI number: 146302158

Start: 5335350

End: 5335913

Strand: Direct

Name: sigZ [H]

Synonym: Fjoh_4426

Alternate gene names: 146302158

Gene position: 5335350-5335913 (Clockwise)

Preceding gene: 146302157

Following gene: 146302159

Centisome position: 87.51

GC content: 34.04

Gene sequence:

>564_bases
ATGAATTTGGAGATAAATACTATTCATAATCAGTTTTATATCATTTTGGGCAATTATATTAAGGCCCGTATAAATGATAC
GGGCGATGCATCTGATGTTTTGCAGGAGGTTTTTATAAAGATAAACGAGAATTTAGGATCACTGACTGATGAAAGCAAAT
TAAAAAGCTGGATTTTCACAATCACAAGAAATTCCATCATTGACTATTACCGTAAAAATTCCAATCATAAAAAATCAGAG
CTGACCGAATGTATGATGCAAAAAATAATGCATGAAACAGATTTTGATAATACAGAAAGTCTGGATTGTTGTCTCATAAA
ATTCATTGAGCGGTTACCTGAAGACTATCGGGATATCATCATGGATAGCGAAATTCATGGAATTAAACAGAAAGATTTAA
CAGAAAAATACAACCTTGCCTATCCGTCAATACGATCTCGAGTCCAAAGAGGCAGATCCAAATTAAAAGAAATGCTTCTA
GATTGCTGCAGTATTGAGTTAGACCGTCGTGGAAATGTTATGAATGTTACTTCTAAAAAATCGTGCAGCGGAGGAAAATG
CTGA

Upstream 100 bases:

>100_bases
TTTATTATGTATTCCAAAAACTGCCTATGTATGGAATAATTTCAGAAATAAAATCAATTGTTGTTAATCCAGCTTTCTAA
ACAAACAGAACATTTAATTT

Downstream 100 bases:

>100_bases
TCACCAGACCATCTACGTAAGCTTCATATATACAAAATTCAAGCTGTTAGAAAAAAAATCAACAAAGTTTGCATCATTTT
TAGATTAGTACGTCTTAGTT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNLEINTIHNQFYIILGNYIKARINDTGDASDVLQEVFIKINENLGSLTDESKLKSWIFTITRNSIIDYYRKNSNHKKSE
LTECMMQKIMHETDFDNTESLDCCLIKFIERLPEDYRDIIMDSEIHGIKQKDLTEKYNLAYPSIRSRVQRGRSKLKEMLL
DCCSIELDRRGNVMNVTSKKSCSGGKC

Sequences:

>Translated_187_residues
MNLEINTIHNQFYIILGNYIKARINDTGDASDVLQEVFIKINENLGSLTDESKLKSWIFTITRNSIIDYYRKNSNHKKSE
LTECMMQKIMHETDFDNTESLDCCLIKFIERLPEDYRDIIMDSEIHGIKQKDLTEKYNLAYPSIRSRVQRGRSKLKEMLL
DCCSIELDRRGNVMNVTSKKSCSGGKC
>Mature_187_residues
MNLEINTIHNQFYIILGNYIKARINDTGDASDVLQEVFIKINENLGSLTDESKLKSWIFTITRNSIIDYYRKNSNHKKSE
LTECMMQKIMHETDFDNTESLDCCLIKFIERLPEDYRDIIMDSEIHGIKQKDLTEKYNLAYPSIRSRVQRGRSKLKEMLL
DCCSIELDRRGNVMNVTSKKSCSGGKC

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014304
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21776; Mature: 21776

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLEINTIHNQFYIILGNYIKARINDTGDASDVLQEVFIKINENLGSLTDESKLKSWIFT
CCCEEEEECCEEEEEECCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ITRNSIIDYYRKNSNHKKSELTECMMQKIMHETDFDNTESLDCCLIKFIERLPEDYRDII
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHH
MDSEIHGIKQKDLTEKYNLAYPSIRSRVQRGRSKLKEMLLDCCSIELDRRGNVMNVTSKK
HCCHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC
SCSGGKC
CCCCCCC
>Mature Secondary Structure
MNLEINTIHNQFYIILGNYIKARINDTGDASDVLQEVFIKINENLGSLTDESKLKSWIFT
CCCEEEEECCEEEEEECCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ITRNSIIDYYRKNSNHKKSELTECMMQKIMHETDFDNTESLDCCLIKFIERLPEDYRDII
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHH
MDSEIHGIKQKDLTEKYNLAYPSIRSRVQRGRSKLKEMLLDCCSIELDRRGNVMNVTSKK
HCCHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC
SCSGGKC
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]