| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146302112
Identifier: 146302112
GI number: 146302112
Start: 5283715
End: 5285193
Strand: Reverse
Name: 146302112
Synonym: Fjoh_4377
Alternate gene names: NA
Gene position: 5285193-5283715 (Counterclockwise)
Preceding gene: 146302113
Following gene: 146302111
Centisome position: 86.69
GC content: 33.6
Gene sequence:
>1479_bases ATGAATTCTAAGAATAACATAAAAAAATATATAATAGAGACAGTCTGTGTTTTGCATATACTGCTATTTGTATACGCTTC AGTAAGTAAACTTCTGGATTTTGAAAATTTTAAAACGCAACTAGGACAATCACCTATTTTAAGTCTGTATGCTGAGTATG TTTCAGTTTTAGTAATTGGAATTGAACTTTTAACTGCTGTACTTTTATGTATCCCCAGATTTAAATTTATAGGTTTGTGG ATTTCGGCAGCACTGATGATTATGTTCACTACGTATATTTATATAATTTTAAACTTCAGTCCGTTTATTCCCTGTTCGTG CGGCGGAATTTTAGAAAAACTGAGCTGGCATGAACATCTGCTTTTTAATCTCTTGTTTACAGGATTGGCCTCATTGGCAA TTCTGCTCAGATCAACTTCAAAACAAACAATAAGATATCTTTTACTTTTAACCATTTTTACGATATCCAGTGTAACTGTC CTTTTCTTGTTTACTGATGACATAATGAAAAAGGAAAACCCTTTTATACGCCGGCTTCCTAATGCATCAGCTGCAAAAAC TAAAGAACTTGATGTAAGAAATAATTCCTATTATATAGCTGGAATATATAATAAAAAGATTTATTTAGGAAACCGTTTAG CTCCTCTTCAGGTATTGGAAGTGGATGAAAATCTAAAGACAAAAAAGAAACACACTATAAAACTCAGCCGTGAAAATTTC CCGTTTAAAGCATTAGAAGTGAGAGTAAAAGAGAATAGTTTTTATGTCAGTGACGGAACTGTTCCAGTTATATACAAAGG TCTGATTTCTGACTGGAAGGCTGCTGTTATCATTGAGGGTAAATTTTATTTTTCCCAGATTGTTTTCATGAACGACAAGA AGATAGCTTTTCGAGCTCAGCAGCCGTCAACAGGAGAGAATATGCTTGGAATTACAGACGAGAAAAGCAGTTTTATAAAC TTCGAATACCAGGCGCTTCAAAAGCAGCACGACGGTATTTTTGATACAGACGGAACAATCCAGTACAGTGGAGCCTTGAA TAAATTGGTTTATACGTACTACTATCGAAACCAGTACTTAGTGATGGATACAGATTTAAATGTATTATCTAGAGCAAATA CAATCGATACTACAAAGAATGCCAAATTAAAAGTGGTAAAATTAGAGCAGTCTGGCGACATAAAACTTGCAGCTCCGCCA TATATGGTAAACAGGAATACTTCGGTCTGTAATAATCTACTTTTTGTAAACTCAATGCTAAGAGGAAGATATGAGGGGGA TGATGTATGGAAACATGCCTCGGTTATAGATGTATATGATATGAACCAAAAGACTTATTTATTAAGTTTTTATGTATATG ACGAAAACAATTTAAGGATGAAAAGCTTTTATGCTTCGGAATCTTCTGTATATATCATCTCTGGACATTATCTGCTGAAA TATCAGTATGGAAAAAACATGAAGTCAAAGTTTAAATGA
Upstream 100 bases:
>100_bases TTAAAGGGTTTATGAGAAAATTCGTATCTACATTTGCACTAGATATAAGTTTAGAAATATCATTCTAATAATAGAAGCAG AGCGTAAAAAATTTGAGGAG
Downstream 100 bases:
>100_bases TAGATACATTTTAAAAGAATACTAGCGCTGGTAGCAGGAGTAAGATCGAAAACCTGAAGAAAAGAGTAGATCATTTTTTT AATTTAATTTTTATTATTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 492; Mature: 492
Protein sequence:
>492_residues MNSKNNIKKYIIETVCVLHILLFVYASVSKLLDFENFKTQLGQSPILSLYAEYVSVLVIGIELLTAVLLCIPRFKFIGLW ISAALMIMFTTYIYIILNFSPFIPCSCGGILEKLSWHEHLLFNLLFTGLASLAILLRSTSKQTIRYLLLLTIFTISSVTV LFLFTDDIMKKENPFIRRLPNASAAKTKELDVRNNSYYIAGIYNKKIYLGNRLAPLQVLEVDENLKTKKKHTIKLSRENF PFKALEVRVKENSFYVSDGTVPVIYKGLISDWKAAVIIEGKFYFSQIVFMNDKKIAFRAQQPSTGENMLGITDEKSSFIN FEYQALQKQHDGIFDTDGTIQYSGALNKLVYTYYYRNQYLVMDTDLNVLSRANTIDTTKNAKLKVVKLEQSGDIKLAAPP YMVNRNTSVCNNLLFVNSMLRGRYEGDDVWKHASVIDVYDMNQKTYLLSFYVYDENNLRMKSFYASESSVYIISGHYLLK YQYGKNMKSKFK
Sequences:
>Translated_492_residues MNSKNNIKKYIIETVCVLHILLFVYASVSKLLDFENFKTQLGQSPILSLYAEYVSVLVIGIELLTAVLLCIPRFKFIGLW ISAALMIMFTTYIYIILNFSPFIPCSCGGILEKLSWHEHLLFNLLFTGLASLAILLRSTSKQTIRYLLLLTIFTISSVTV LFLFTDDIMKKENPFIRRLPNASAAKTKELDVRNNSYYIAGIYNKKIYLGNRLAPLQVLEVDENLKTKKKHTIKLSRENF PFKALEVRVKENSFYVSDGTVPVIYKGLISDWKAAVIIEGKFYFSQIVFMNDKKIAFRAQQPSTGENMLGITDEKSSFIN FEYQALQKQHDGIFDTDGTIQYSGALNKLVYTYYYRNQYLVMDTDLNVLSRANTIDTTKNAKLKVVKLEQSGDIKLAAPP YMVNRNTSVCNNLLFVNSMLRGRYEGDDVWKHASVIDVYDMNQKTYLLSFYVYDENNLRMKSFYASESSVYIISGHYLLK YQYGKNMKSKFK >Mature_492_residues MNSKNNIKKYIIETVCVLHILLFVYASVSKLLDFENFKTQLGQSPILSLYAEYVSVLVIGIELLTAVLLCIPRFKFIGLW ISAALMIMFTTYIYIILNFSPFIPCSCGGILEKLSWHEHLLFNLLFTGLASLAILLRSTSKQTIRYLLLLTIFTISSVTV LFLFTDDIMKKENPFIRRLPNASAAKTKELDVRNNSYYIAGIYNKKIYLGNRLAPLQVLEVDENLKTKKKHTIKLSRENF PFKALEVRVKENSFYVSDGTVPVIYKGLISDWKAAVIIEGKFYFSQIVFMNDKKIAFRAQQPSTGENMLGITDEKSSFIN FEYQALQKQHDGIFDTDGTIQYSGALNKLVYTYYYRNQYLVMDTDLNVLSRANTIDTTKNAKLKVVKLEQSGDIKLAAPP YMVNRNTSVCNNLLFVNSMLRGRYEGDDVWKHASVIDVYDMNQKTYLLSFYVYDENNLRMKSFYASESSVYIISGHYLLK YQYGKNMKSKFK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56620; Mature: 56620
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSKNNIKKYIIETVCVLHILLFVYASVSKLLDFENFKTQLGQSPILSLYAEYVSVLVIG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH IELLTAVLLCIPRFKFIGLWISAALMIMFTTYIYIILNFSPFIPCSCGGILEKLSWHEHL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHH LFNLLFTGLASLAILLRSTSKQTIRYLLLLTIFTISSVTVLFLFTDDIMKKENPFIRRLP HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEEEHHHHCCCCCHHHCCC NASAAKTKELDVRNNSYYIAGIYNKKIYLGNRLAPLQVLEVDENLKTKKKHTIKLSRENF CCCCCCCEEEEECCCCEEEEEEEECEEEECCCCCCEEEEECCCCCCCCCCEEEEEECCCC PFKALEVRVKENSFYVSDGTVPVIYKGLISDWKAAVIIEGKFYFSQIVFMNDKKIAFRAQ CEEEEEEEEECCEEEEECCCHHHHHHHHHCCCCEEEEEECEEEEEEEEEECCCEEEEEEC QPSTGENMLGITDEKSSFINFEYQALQKQHDGIFDTDGTIQYSGALNKLVYTYYYRNQYL CCCCCCCCEEEECCCCCEEEHHHHHHHHHCCCCCCCCCCEEECCCHHHEEEEEEECCEEE VMDTDLNVLSRANTIDTTKNAKLKVVKLEQSGDIKLAAPPYMVNRNTSVCNNLLFVNSML EEECCHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEECCCEEECCCHHHHHHHHHHHHHH RGRYEGDDVWKHASVIDVYDMNQKTYLLSFYVYDENNLRMKSFYASESSVYIISGHYLLK CCCCCCCHHHCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCEEEEEECCEEEE YQYGKNMKSKFK EECCCCCHHHCC >Mature Secondary Structure MNSKNNIKKYIIETVCVLHILLFVYASVSKLLDFENFKTQLGQSPILSLYAEYVSVLVIG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH IELLTAVLLCIPRFKFIGLWISAALMIMFTTYIYIILNFSPFIPCSCGGILEKLSWHEHL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHH LFNLLFTGLASLAILLRSTSKQTIRYLLLLTIFTISSVTVLFLFTDDIMKKENPFIRRLP HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEEEHHHHCCCCCHHHCCC NASAAKTKELDVRNNSYYIAGIYNKKIYLGNRLAPLQVLEVDENLKTKKKHTIKLSRENF CCCCCCCEEEEECCCCEEEEEEEECEEEECCCCCCEEEEECCCCCCCCCCEEEEEECCCC PFKALEVRVKENSFYVSDGTVPVIYKGLISDWKAAVIIEGKFYFSQIVFMNDKKIAFRAQ CEEEEEEEEECCEEEEECCCHHHHHHHHHCCCCEEEEEECEEEEEEEEEECCCEEEEEEC QPSTGENMLGITDEKSSFINFEYQALQKQHDGIFDTDGTIQYSGALNKLVYTYYYRNQYL CCCCCCCCEEEECCCCCEEEHHHHHHHHHCCCCCCCCCCEEECCCHHHEEEEEEECCEEE VMDTDLNVLSRANTIDTTKNAKLKVVKLEQSGDIKLAAPPYMVNRNTSVCNNLLFVNSML EEECCHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEECCCEEECCCHHHHHHHHHHHHHH RGRYEGDDVWKHASVIDVYDMNQKTYLLSFYVYDENNLRMKSFYASESSVYIISGHYLLK CCCCCCCHHHCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCEEEEEECCEEEE YQYGKNMKSKFK EECCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA